| Id: | DNase-seq/ENCSR971MMF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR971MMF [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF942JCU|/files/ENCFF942JCU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR971MMF | float |
DNase-seq_ENCSR971MMF |
DNase-seq ENCSR971MMF [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
|
 |
[0.152, 14.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF108GBD.bed.gz | 378.28 KB | 261164ac0895f4e8a1d6dfa4d31202f3 |
| ENCFF108GBD.bed.gz.dvc | 100.0 B | 68d318c975b861da3b3f3fcfdbd3ccb9 |
| ENCFF108GBD.tabix.bed.gz | 345.44 KB | 882f997a88efdd841be9c015ae597baf |
| ENCFF108GBD.tabix.bed.gz.dvc | 106.0 B | bf905d5e0785c4ec975c5fa29eb5ac54 |
| ENCFF108GBD.tabix.bed.gz.tbi | 192.33 KB | 0a8069cd0e6551a13a2196a173c1c115 |
| ENCFF108GBD.tabix.bed.gz.tbi.dvc | 110.0 B | d5162bf08685c32832cd6cd1defd2081 |
| genomic_resource.yaml | 2.45 KB | ac17a3c8b529a50a2a827ad73faee441 |
| genomic_resource_original.yaml | 2.26 KB | 5cd3aaa27290d3c5eb02cbd245ea922f |
| statistics/ |