Resource
| Id | DNase-seq/ENCSR969QKG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR969QKG [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (48 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF682STC|/files/ENCFF682STC/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR969QKG | float |
DNase-seq_ENCSR969QKG |
DNase-seq ENCSR969QKG [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"]
|
 |
[0.0845, 20.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9598459 | 0.30% | 42857 |
| chr1 | 991969 | 0.40% | 4368 |
| chr2 | 673998 | 0.28% | 2997 |
| chr3 | 510436 | 0.26% | 2267 |
| chr4 | 319156 | 0.17% | 1434 |
| chr5 | 418401 | 0.23% | 1880 |
| chr6 | 533062 | 0.31% | 2322 |
| chr7 | 442363 | 0.28% | 2011 |
| chr8 | 347162 | 0.24% | 1560 |
| chr9 | 393285 | 0.28% | 1788 |
| chr10 | 431530 | 0.32% | 1935 |
| chr11 | 515349 | 0.38% | 2300 |
| chr12 | 486971 | 0.37% | 2163 |
| chr13 | 185676 | 0.16% | 844 |
| chr14 | 338062 | 0.32% | 1493 |
| chr15 | 319740 | 0.31% | 1448 |
| chr16 | 393241 | 0.44% | 1749 |
| chr17 | 603448 | 0.72% | 2692 |
| chr18 | 142288 | 0.18% | 654 |
| chr19 | 612632 | 1.05% | 2613 |
| chr20 | 280746 | 0.44% | 1298 |
| chr21 | 125231 | 0.27% | 591 |
| chr22 | 244955 | 0.48% | 1131 |
| chrX | 277699 | 0.18% | 1271 |
| chrY | 11059 | 0.02% | 48 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42857 | 2 | 1060 | 223.96 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF266ESH.bed.gz | 469.26 KB | 40ad0b00bca7b5e59b21ef7089006681 |
| ENCFF266ESH.tabix.bed.gz | 435.2 KB | 27ec181eba10a8012897a4efc57224fd |
| ENCFF266ESH.tabix.bed.gz.tbi | 206.73 KB | e75a6ef8abc48df40e337175bfc93456 |
| genomic_resource.yaml | 2.13 KB | ddca77adb2e65a0c85a8f8fd260b9e5b |
| statistics/ |