DNase-seq_ENCSR969QKG
DNase-seq ENCSR969QKG [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"]
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| Id: | DNase-seq/ENCSR969QKG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR969QKG [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (48 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF682STC|/files/ENCFF682STC/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR969QKG | float |
DNase-seq_ENCSR969QKG |
DNase-seq ENCSR969QKG [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"]
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[0.0845, 20.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266ESH.bed.gz | 469.26 KB | 40ad0b00bca7b5e59b21ef7089006681 |
| ENCFF266ESH.bed.gz.dvc | 100.0 B | 360bb15d78ca038844a9ad79429bb2f0 |
| ENCFF266ESH.tabix.bed.gz | 435.2 KB | 27ec181eba10a8012897a4efc57224fd |
| ENCFF266ESH.tabix.bed.gz.dvc | 106.0 B | f0e15da7d9e0e1093b76775543c0b52f |
| ENCFF266ESH.tabix.bed.gz.tbi | 206.73 KB | e75a6ef8abc48df40e337175bfc93456 |
| ENCFF266ESH.tabix.bed.gz.tbi.dvc | 110.0 B | f19879635cd5145cda43a22fdd399be2 |
| genomic_resource.yaml | 2.13 KB | ddca77adb2e65a0c85a8f8fd260b9e5b |
| genomic_resource_original.yaml | 2.0 KB | eb4c0d8eea4493ac428dd31f520f4b64 |
| statistics/ |