DNase-seq_ENCSR968TPO
DNase-seq ENCSR968TPO [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR968TPO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR968TPO [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF361GMH|/files/ENCFF361GMH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR968TPO | float |
DNase-seq_ENCSR968TPO |
DNase-seq ENCSR968TPO [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)"]
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[0.0283, 17.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF406TIC.bed.gz | 1.72 MB | b9801528b44ab0900dbf783ec7e76ec3 |
| ENCFF406TIC.bed.gz.dvc | 101.0 B | 89e8ce7d5a4de7ba2b5557714e83e2fb |
| ENCFF406TIC.tabix.bed.gz | 1.61 MB | d70f0407628a81b6602f81af69b887cf |
| ENCFF406TIC.tabix.bed.gz.dvc | 107.0 B | 8ec9929a58f8640a95dfde157388d8e9 |
| ENCFF406TIC.tabix.bed.gz.tbi | 306.75 KB | 9e17877061859643e53906f49bda76b7 |
| ENCFF406TIC.tabix.bed.gz.tbi.dvc | 110.0 B | fb520e517d0d46a1fd0f63d4ee81ae69 |
| genomic_resource.yaml | 2.05 KB | 2036f368035764afc0020980a3af8c3f |
| genomic_resource_original.yaml | 1.95 KB | 5d5d908c94877360e6de1cb648343557 |
| statistics/ |