Resource
| Id | DNase-seq/ENCSR968TPO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR968TPO [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF361GMH|/files/ENCFF361GMH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR968TPO | float |
DNase-seq_ENCSR968TPO |
DNase-seq ENCSR968TPO [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)"]
|
 |
[0.0283, 17.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34733004 | 1.08% | 174771 |
| chr1 | 3328470 | 1.34% | 16623 |
| chr2 | 3106079 | 1.28% | 15535 |
| chr3 | 1863647 | 0.94% | 9412 |
| chr4 | 1009881 | 0.53% | 5127 |
| chr5 | 1665253 | 0.92% | 8542 |
| chr6 | 1463053 | 0.86% | 7514 |
| chr7 | 1679833 | 1.05% | 8464 |
| chr8 | 1435803 | 0.99% | 7333 |
| chr9 | 1613970 | 1.17% | 8110 |
| chr10 | 2211413 | 1.65% | 11193 |
| chr11 | 1949820 | 1.44% | 9559 |
| chr12 | 1378677 | 1.03% | 6948 |
| chr13 | 739994 | 0.65% | 3741 |
| chr14 | 1255248 | 1.17% | 6344 |
| chr15 | 1493056 | 1.46% | 7502 |
| chr16 | 1244771 | 1.38% | 6267 |
| chr17 | 1801172 | 2.16% | 8944 |
| chr18 | 720438 | 0.90% | 3679 |
| chr19 | 1120478 | 1.91% | 5527 |
| chr20 | 1140327 | 1.77% | 5856 |
| chr21 | 651279 | 1.39% | 3182 |
| chr22 | 1097350 | 2.16% | 5416 |
| chrX | 760650 | 0.49% | 3933 |
| chrY | 2342 | <0.01% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 174771 | 1 | 1340 | 198.73 | 197 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF406TIC.bed.gz | 1.72 MB | b9801528b44ab0900dbf783ec7e76ec3 |
| ENCFF406TIC.tabix.bed.gz | 1.61 MB | d70f0407628a81b6602f81af69b887cf |
| ENCFF406TIC.tabix.bed.gz.tbi | 306.75 KB | 9e17877061859643e53906f49bda76b7 |
| genomic_resource.yaml | 2.05 KB | 2036f368035764afc0020980a3af8c3f |
| statistics/ |