| Id: | DNase-seq/ENCSR965ZWZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR965ZWZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF486BSP|/files/ENCFF486BSP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 38066036 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR965ZWZ | float |
DNase-seq_ENCSR965ZWZ |
DNase-seq ENCSR965ZWZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
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[0.29, 50.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF195VAU.bed.gz | 407.86 KB | c443bf16c8dbe1e6f400293193185024 |
| ENCFF195VAU.bed.gz.dvc | 100.0 B | b00e1efa4e2bf449812d540634fe987a |
| ENCFF195VAU.tabix.bed.gz | 369.73 KB | 3ea9976f20b6745952685b95f7b0d110 |
| ENCFF195VAU.tabix.bed.gz.dvc | 106.0 B | e09d6f42e098f86088e476df1e5eb3e8 |
| ENCFF195VAU.tabix.bed.gz.tbi | 193.55 KB | 85f206ae80f26cefe8fcfe59a16af471 |
| ENCFF195VAU.tabix.bed.gz.tbi.dvc | 110.0 B | 30b9d9160c6da40ab4b3017227d58b0d |
| genomic_resource.yaml | 2.41 KB | fcd53d56136227f3209a7af975f93e1b |
| genomic_resource_original.yaml | 2.19 KB | 58e03b1f38cc2da0b7cfc77a6e521880 |
| statistics/ |