Resource

Id DNase-seq/ENCSR965ZWZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR965ZWZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
Description
Labels
  • accession: ENCSR965ZWZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • date_created: 2020-04-19T18:36:59.430949+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR965ZWZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR965ZWZ float

DNase-seq_ENCSR965ZWZ
DNase-seq ENCSR965ZWZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR965ZWZ [0.29, 50.2]
n
7,123,205
mean
6.55
sd
6.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71232050.22% 36870
chr1 733443 0.29% 3798
chr2 486725 0.20% 2536
chr3 386200 0.19% 1975
chr4 244805 0.13% 1246
chr5 306748 0.17% 1607
chr6 412816 0.24% 2138
chr7 325899 0.20% 1698
chr8 252678 0.17% 1324
chr9 287996 0.21% 1488
chr10 304497 0.23% 1605
chr11 361855 0.27% 1888
chr12 372410 0.28% 1923
chr13 142129 0.12% 733
chr14 249762 0.23% 1284
chr15 235387 0.23% 1224
chr16 302766 0.34% 1551
chr17 442348 0.53% 2255
chr18 103726 0.13% 553
chr19 501171 0.85% 2506
chr20 205556 0.32% 1085
chr21 80299 0.17% 423
chr22 175099 0.34% 924
chrX 201926 0.13% 1071
chrY 6964 0.01% 35
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36870 4 760 193.2 186
global segment-length histogram

Files

Filename Size md5
ENCFF195VAU.bed.gz 407.86 KB c443bf16c8dbe1e6f400293193185024
ENCFF195VAU.tabix.bed.gz 369.73 KB 3ea9976f20b6745952685b95f7b0d110
ENCFF195VAU.tabix.bed.gz.tbi 193.55 KB 85f206ae80f26cefe8fcfe59a16af471
genomic_resource.yaml 2.41 KB fcd53d56136227f3209a7af975f93e1b
statistics/