DNase-seq_ENCSR964WHY
DNase-seq ENCSR964WHY [biosample_summary="Homo sapiens H9 G1b phase stably expressing CDT1, stably expressing GMNN"]
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| Id: | DNase-seq/ENCSR964WHY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR964WHY [biosample_summary="Homo sapiens H9 G1b phase stably expressing CDT1, stably expressing GMNN"] |
| Description: |
status: released biological_replicates: Rep 1 summary: stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1b phase output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF308PNO|/files/ENCFF308PNO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF347LOI|/files/ENCFF347LOI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR964WHY | float |
DNase-seq_ENCSR964WHY |
DNase-seq ENCSR964WHY [biosample_summary="Homo sapiens H9 G1b phase stably expressing CDT1, stably expressing GMNN"]
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[0.029, 12.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF736LDI.bed.gz | 1.1 MB | e8a8a8b95510868624d003c606d2782e |
| ENCFF736LDI.bed.gz.dvc | 101.0 B | f8a01a6b6217df9fd53fd35d74f05c5a |
| ENCFF736LDI.tabix.bed.gz | 1.01 MB | 03fb466eed972363de928770c9ad9a67 |
| ENCFF736LDI.tabix.bed.gz.dvc | 107.0 B | 315c68a22d7963cb31400bbb8bc70785 |
| ENCFF736LDI.tabix.bed.gz.tbi | 433.43 KB | a4ba07df8460d9e997bd6aa68b8120e5 |
| ENCFF736LDI.tabix.bed.gz.tbi.dvc | 110.0 B | 4bbef53e47f4c156bba700af05463110 |
| genomic_resource.yaml | 3.08 KB | 63b315bdbe6559d5c0def1051ea70a54 |
| genomic_resource_original.yaml | 2.97 KB | 9f40ea9de6e52a29033a12fcd6d6fb62 |
| statistics/ |