DNase-seq_ENCSR964MZQ
DNase-seq ENCSR964MZQ [biosample_summary="Homo sapiens trophoblast cell embryo (39 weeks) and embryo (40 weeks)"]
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| Id: | DNase-seq/ENCSR964MZQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR964MZQ [biosample_summary="Homo sapiens trophoblast cell embryo (39 weeks) and embryo (40 weeks)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (40 weeks) embryo (39 weeks) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF809XEZ|/files/ENCFF809XEZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR964MZQ | float |
DNase-seq_ENCSR964MZQ |
DNase-seq ENCSR964MZQ [biosample_summary="Homo sapiens trophoblast cell embryo (39 weeks) and embryo (40 weeks)"]
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[0.029, 12.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF619GCA.bed.gz | 2.34 MB | 21b0fd607ac3e68ff1dda09d303e684e |
| ENCFF619GCA.bed.gz.dvc | 101.0 B | 7876ab9ca46ddc046e70a044894df5f5 |
| ENCFF619GCA.tabix.bed.gz | 2.14 MB | 476a11f16a93b6a75a64482cdaa982af |
| ENCFF619GCA.tabix.bed.gz.dvc | 107.0 B | f2269272352cdb93cdf5cc13fc586ab5 |
| ENCFF619GCA.tabix.bed.gz.tbi | 648.08 KB | b2096491b3ee85b91cd9120538eca305 |
| ENCFF619GCA.tabix.bed.gz.tbi.dvc | 110.0 B | 0ce6ed257056f07c7170faba4bb43c6b |
| genomic_resource.yaml | 2.11 KB | 1643499427dd8df19e017ab4b332c41f |
| genomic_resource_original.yaml | 2.0 KB | 9c56e7a3e903398927c06ff0eb57dac6 |
| statistics/ |