DNase-seq_ENCSR963ALV
DNase-seq ENCSR963ALV [biosample_summary="Homo sapiens neural progenitor cell originated from H9"]
×
| Id: | DNase-seq/ENCSR963ALV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR963ALV [biosample_summary="Homo sapiens neural progenitor cell originated from H9"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (5 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF123YLB|/files/ENCFF123YLB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR963ALV | float |
DNase-seq_ENCSR963ALV |
DNase-seq ENCSR963ALV [biosample_summary="Homo sapiens neural progenitor cell originated from H9"]
|
|
[0.0237, 46.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF502QXW.bed.gz | 1.99 MB | 5f8d3825b28f4d4fece539762b90ba07 |
| ENCFF502QXW.bed.gz.dvc | 101.0 B | 2e43d630d2af717e3e8f911c2b4acd3f |
| ENCFF502QXW.tabix.bed.gz | 1.82 MB | 30baaf09b266ee12c92b23fd840346d5 |
| ENCFF502QXW.tabix.bed.gz.dvc | 107.0 B | 52f38493c25983516de43a14a4c900a2 |
| ENCFF502QXW.tabix.bed.gz.tbi | 624.83 KB | c823db151687588aec4c9e3ded7f3b4c |
| ENCFF502QXW.tabix.bed.gz.tbi.dvc | 110.0 B | badd803ef86aa6e0f813349e53042294 |
| genomic_resource.yaml | 2.31 KB | 93428d3a7702c9ce908fa79d2cbad0e5 |
| genomic_resource_original.yaml | 2.21 KB | 5f4a01c4d7bfc4c71fc5359d3da5ae5f |
| statistics/ |