Resource

Id DNase-seq/ENCSR962MFIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR962MFI [biosample_summary="Homo sapiens large intestine tissue female embryo (85 days)"]
Description
Labels
  • accession: ENCSR962MFI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue female embryo (85 days)
  • date_created: 2015-09-16T21:42:20.281537+00:00
  • date_released: 2013-07-31
  • doi:
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (85 days)
  • status: released
  • submitter_comment: This experiment was originally revoked due to concerns of biosample mislabeling, but has been unrevoked on Sept 8, 2025 after a lab review determined the biosample was not mislabeled.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR962MFI float

DNase-seq_ENCSR962MFI
DNase-seq ENCSR962MFI [biosample_summary="Homo sapiens large intestine tissue female embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR962MFI [3, 2.62e+03]
n
8,233,507
mean
94.9
sd
138

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82335070.26% 54803
chr1 803700 0.32% 5351
chr1_KI270709v1_random 450 0.67% 3
chr1_KI270711v1_random 150 0.36% 1
chr1_KI270713v1_random 600 1.47% 4
chr1_KI270714v1_random 150 0.36% 1
chr2 634350 0.26% 4216
chr3 491250 0.25% 3266
chr4 358754 0.19% 2388
chr4_GL000008v2_random 1050 0.50% 6
chr5 402271 0.22% 2678
chr6 500250 0.29% 3331
chr7 407353 0.26% 2708
chr8 328317 0.23% 2184
chr9 318000 0.23% 2116
chr9_KI270718v1_random 300 0.79% 2
chr10 378896 0.28% 2525
chr11 397160 0.29% 2644
chr12 425550 0.32% 2835
chr13 195369 0.17% 1301
chr14 278827 0.26% 1854
chr14_GL000225v1_random 2850 1.35% 19
chr14_KI270726v1_random 150 0.34% 1
chr15 259650 0.25% 1726
chr16 288600 0.32% 1923
chr16_KI270728v1_random 150 0.01% 1
chr17 416547 0.50% 2774
chr17_GL000205v2_random 900 0.48% 6
chr17_KI270729v1_random 300 0.11% 2
chr18 153600 0.19% 1024
chr19 422500 0.72% 2813
chr20 223350 0.35% 1487
chr21 99300 0.21% 661
chr22 168513 0.33% 1124
chr22_KI270733v1_random 750 0.42% 5
chr22_KI270735v1_random 150 0.35% 1
chr22_KI270738v1_random 150 0.15% 1
chrUn_GL000195v1 600 0.33% 4
chrUn_GL000214v1 300 0.22% 2
chrUn_GL000216v2 1200 0.68% 8
chrUn_GL000219v1 1050 0.59% 7
chrUn_GL000220v1 300 0.19% 2
chrUn_GL000224v1 300 0.17% 2
chrUn_KI270333v1 750 27.79% 5
chrUn_KI270336v1 150 14.62% 1
chrUn_KI270337v1 150 13.38% 1
chrUn_KI270438v1 3000 2.67% 20
chrUn_KI270442v1 600 0.15% 4
chrUn_KI270466v1 300 24.33% 2
chrUn_KI270467v1 1200 30.61% 8
chrUn_KI270538v1 150 0.16% 1
chrX 250350 0.16% 1668
chrY 12900 0.02% 86
3314 contigs with no values (124097942 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54803 61 450 150.24 150
global segment-length histogram

Files

Filename Size md5
ENCFF059EQC.bed.gz 539.03 KB 2467a54007e3d3fd52b2ed0cf89af1fa
ENCFF059EQC.tabix.bed.gz 466.72 KB 05f3d4418d313d671b1be45cabbb276a
ENCFF059EQC.tabix.bed.gz.tbi 289.54 KB 1e30ada0aa1a9fcc4389fce105948580
genomic_resource.yaml 1.4 KB dd1a580d93ad4a96b021f41ae6a96746
statistics/