| Id: | DNase-seq/ENCSR960EVM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR960EVM [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF074VBQ|/files/ENCFF074VBQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32877100 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR960EVM | float |
DNase-seq_ENCSR960EVM |
DNase-seq ENCSR960EVM [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
|
 |
[0.397, 53.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF559YDV.bed.gz | 479.04 KB | ab5d4e62f88000ddff87921b19c87179 |
| ENCFF559YDV.bed.gz.dvc | 100.0 B | 435207240f93c57843a95be7e8889f5b |
| ENCFF559YDV.tabix.bed.gz | 430.94 KB | 101a382416e1c7e057598b41fe7895ae |
| ENCFF559YDV.tabix.bed.gz.dvc | 106.0 B | 11b2f7b77a89eaf12c70e48aae62d4ce |
| ENCFF559YDV.tabix.bed.gz.tbi | 228.57 KB | f0165095e6f5d3b45dd3f8508667beb4 |
| ENCFF559YDV.tabix.bed.gz.tbi.dvc | 110.0 B | 461ce7d8e3ff37b053e9b51a21225d12 |
| genomic_resource.yaml | 2.47 KB | 2ba5ae44c02d1f0ee63206e87340cc8d |
| genomic_resource_original.yaml | 2.24 KB | 61ca8c06b1fd14be50c6c9a4a187b329 |
| statistics/ |