DNase-seq_ENCSR960EJV
DNase-seq ENCSR960EJV [biosample_summary="Homo sapiens left lung tissue female embryo (110 days)"]
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| Id: | DNase-seq/ENCSR960EJV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR960EJV [biosample_summary="Homo sapiens left lung tissue female embryo (110 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN362RYF|/analyses/ENCAN362RYF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF951RAO|/files/ENCFF951RAO/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38179352 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF166WYW|/files/ENCFF166WYW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 37957213 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR960EJV | float |
DNase-seq_ENCSR960EJV |
DNase-seq ENCSR960EJV [biosample_summary="Homo sapiens left lung tissue female embryo (110 days)"]
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[3, 914] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF944FSO.bed.gz | 1.01 MB | 6efc534174f60733629a6e6fe1b7884d |
| ENCFF944FSO.bed.gz.dvc | 101.0 B | f0ed5b83c6928ba133badaffa1650be5 |
| ENCFF944FSO.tabix.bed.gz | 891.36 KB | 6ff96b9318444589ba0397e90233458e |
| ENCFF944FSO.tabix.bed.gz.dvc | 106.0 B | 6ace0317f9f5ddfd0d33cae192ec5e84 |
| ENCFF944FSO.tabix.bed.gz.tbi | 493.64 KB | 7dec8eea57d4c07ebc4c1476fd918e60 |
| ENCFF944FSO.tabix.bed.gz.tbi.dvc | 110.0 B | 7fa9a23fcba16f4bbdf1d807aadc2014 |
| genomic_resource.yaml | 2.59 KB | 99ef0ac26d46e962372f1b02e06ecf37 |
| genomic_resource_original.yaml | 2.5 KB | 220b6966cc207079440015a891b0b186 |
| statistics/ |