Resource
| Id | DNase-seq/ENCSR960EJV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR960EJV [biosample_summary="Homo sapiens left lung tissue female embryo (110 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN362RYF|/analyses/ENCAN362RYF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF951RAO|/files/ENCFF951RAO/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38179352 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF166WYW|/files/ENCFF166WYW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 37957213 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR960EJV | float |
DNase-seq_ENCSR960EJV |
DNase-seq ENCSR960EJV [biosample_summary="Homo sapiens left lung tissue female embryo (110 days)"]
|
 |
[3, 914] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16098497 | 0.50% | 106937 |
| chr1 | 1406721 | 0.57% | 9347 |
| chr2 | 1338837 | 0.55% | 8896 |
| chr3 | 1092634 | 0.55% | 7254 |
| chr4 | 897823 | 0.47% | 5959 |
| chr5 | 971748 | 0.54% | 6447 |
| chr6 | 1003350 | 0.59% | 6663 |
| chr7 | 837105 | 0.53% | 5566 |
| chr8 | 764228 | 0.53% | 5074 |
| chr9 | 665455 | 0.48% | 4428 |
| chr10 | 812778 | 0.61% | 5402 |
| chr11 | 804712 | 0.60% | 5341 |
| chr12 | 781725 | 0.59% | 5192 |
| chr13 | 498827 | 0.44% | 3308 |
| chr14 | 489630 | 0.46% | 3258 |
| chr15 | 509240 | 0.50% | 3382 |
| chr16 | 464122 | 0.51% | 3085 |
| chr17 | 594895 | 0.71% | 3952 |
| chr18 | 407525 | 0.51% | 2711 |
| chr19 | 447150 | 0.76% | 2972 |
| chr20 | 389000 | 0.60% | 2589 |
| chr21 | 189347 | 0.41% | 1257 |
| chr22 | 244548 | 0.48% | 1623 |
| chrX | 486347 | 0.31% | 3226 |
| chrY | 750 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106937 | 18 | 450 | 150.54 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF944FSO.bed.gz | 1.01 MB | 6efc534174f60733629a6e6fe1b7884d |
| ENCFF944FSO.tabix.bed.gz | 891.36 KB | 6ff96b9318444589ba0397e90233458e |
| ENCFF944FSO.tabix.bed.gz.tbi | 493.64 KB | 7dec8eea57d4c07ebc4c1476fd918e60 |
| genomic_resource.yaml | 2.59 KB | 99ef0ac26d46e962372f1b02e06ecf37 |
| statistics/ |