DNase-seq_ENCSR956NOL
DNase-seq ENCSR956NOL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (127 days)"]
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| Id: | DNase-seq/ENCSR956NOL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR956NOL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (127 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (127 days) output_type: peaks audit_error: Alignment file {ENCFF044YTH|/files/ENCFF044YTH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 19209462 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Replicate 1_1 has no significant footprints detected. audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF044YTH|/files/ENCFF044YTH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR956NOL | float |
DNase-seq_ENCSR956NOL |
DNase-seq ENCSR956NOL [biosample_summary="Homo sapiens muscle of arm tissue male embryo (127 days)"]
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[0.365, 14.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF637NQZ.bed.gz | 222.36 KB | d3d6b2dd26bd221ee956ac3b438b7a80 |
| ENCFF637NQZ.bed.gz.dvc | 100.0 B | d3a963e0bf8fddf01074f4da997e68fb |
| ENCFF637NQZ.tabix.bed.gz | 200.45 KB | 97c28e817a621c491d59335ac5fc6859 |
| ENCFF637NQZ.tabix.bed.gz.dvc | 106.0 B | c8e71424631d46cb2ed27d35948a22ba |
| ENCFF637NQZ.tabix.bed.gz.tbi | 133.96 KB | 7820fdc21cc3210607bfb8ed4fc12266 |
| ENCFF637NQZ.tabix.bed.gz.tbi.dvc | 110.0 B | 8de0258a685a3c14c98f1fb4390c7502 |
| genomic_resource.yaml | 2.74 KB | afaadfdd8f125a4943acf6df3aa4748b |
| genomic_resource_original.yaml | 2.64 KB | 6f2f703de2b2781bdec1311ac953652a |
| statistics/ |