DNase-seq_ENCSR953XJU
DNase-seq ENCSR953XJU [biosample_summary="Homo sapiens left kidney tissue female embryo (107 days)"]
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| Id: | DNase-seq/ENCSR953XJU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR953XJU [biosample_summary="Homo sapiens left kidney tissue female embryo (107 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (107 days) output_type: peaks audit_warning: Alignment file {ENCFF373OSU|/files/ENCFF373OSU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24276545 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR953XJU | float |
DNase-seq_ENCSR953XJU |
DNase-seq ENCSR953XJU [biosample_summary="Homo sapiens left kidney tissue female embryo (107 days)"]
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[0.289, 14.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF361ASF.bed.gz | 405.41 KB | 1c44113e52e6269b8560920d67c61952 |
| ENCFF361ASF.bed.gz.dvc | 100.0 B | ae906c295a755fd80a841168556b215e |
| ENCFF361ASF.tabix.bed.gz | 368.11 KB | e850ce28d3101df43edefd8713368ddc |
| ENCFF361ASF.tabix.bed.gz.dvc | 106.0 B | e98ebaec7059e28ff410ffded318f5e9 |
| ENCFF361ASF.tabix.bed.gz.tbi | 217.84 KB | b93553291724c36e0d859d1a0ebab1c1 |
| ENCFF361ASF.tabix.bed.gz.tbi.dvc | 110.0 B | f6b6bde48925735beb7056ff1c5d7d42 |
| genomic_resource.yaml | 1.84 KB | 0e4d28bc99d87a80ed0bed002422996e |
| genomic_resource_original.yaml | 1.74 KB | 20bd1a917013b7c61ad18a7fe35972bb |
| statistics/ |