| Id: | DNase-seq/ENCSR953UJL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR953UJL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF817ZNY|/files/ENCFF817ZNY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25358504 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR953UJL | float |
DNase-seq_ENCSR953UJL |
DNase-seq ENCSR953UJL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
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[0.356, 66.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF307OXE.bed.gz | 396.61 KB | f01921346cca605e9b6f26f317894770 |
| ENCFF307OXE.bed.gz.dvc | 100.0 B | 2120380ed4abec5f811664e9af7f18d0 |
| ENCFF307OXE.tabix.bed.gz | 359.14 KB | affaabb3212fe8d2c394d9143e0617ec |
| ENCFF307OXE.tabix.bed.gz.dvc | 106.0 B | 246345af658a689bc2c560539fb21f6e |
| ENCFF307OXE.tabix.bed.gz.tbi | 193.13 KB | d2f8ee1714fe77af4eb4f7007a289a64 |
| ENCFF307OXE.tabix.bed.gz.tbi.dvc | 110.0 B | f516fd3330d6b7f92905747643ab2aa5 |
| genomic_resource.yaml | 2.78 KB | 9bef197e5908b3874c9ae2a4646c9050 |
| genomic_resource_original.yaml | 2.49 KB | a04eabe88fd60e34a231814e32eabb5c |
| statistics/ |