Resource

Id DNase-seq/ENCSR953OBWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR953OBW [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR953OBW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell
  • date_created: 2022-05-20T16:18:51.433760+00:00
  • date_released: 2022-08-05
  • doi: 10.17989/ENCSR953OBW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR953OBW float

DNase-seq_ENCSR953OBW
DNase-seq ENCSR953OBW [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR953OBW [0.0969, 31]
n
15,740,475
mean
2.63
sd
2.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157404750.49% 63621
chr1 1578961 0.63% 6313
chr2 1197476 0.49% 4830
chr3 866133 0.44% 3483
chr4 611206 0.32% 2448
chr5 737858 0.41% 2968
chr6 974425 0.57% 3839
chr7 761137 0.48% 3106
chr8 594855 0.41% 2448
chr9 614542 0.44% 2523
chr10 712124 0.53% 2878
chr11 804103 0.60% 3291
chr12 822680 0.62% 3313
chr13 368129 0.32% 1469
chr14 545069 0.51% 2173
chr15 486941 0.48% 2048
chr16 584415 0.65% 2371
chr17 898116 1.08% 3614
chr18 273482 0.34% 1123
chr19 874664 1.49% 3460
chr20 416478 0.65% 1743
chr21 196503 0.42% 790
chr22 335661 0.66% 1417
chrX 485517 0.31% 1973
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63621 1 1100 247.41 220
global segment-length histogram

Files

Filename Size md5
ENCFF931FYG.bed.gz 683.8 KB dc5d6c2fc638acf01d6f02c595dd10be
ENCFF931FYG.tabix.bed.gz 640.76 KB 54efe55a26540c06926d53db38fe2db5
ENCFF931FYG.tabix.bed.gz.tbi 277.11 KB da0e518f1e21f37345af128616766d0e
genomic_resource.yaml 1.33 KB 95faf155ced94bc127b5a89ff601db94
statistics/