Resource

Id DNase-seq/ENCSR953JVXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR953JVX [biosample_summary="Homo sapiens kidney tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR953JVX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:50.518808+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR953JVX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR953JVX float

DNase-seq_ENCSR953JVX
DNase-seq ENCSR953JVX [biosample_summary="Homo sapiens kidney tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR953JVX [3, 761]
n
10,909,662
mean
43.9
sd
43.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 109096620.34% 72344
chr1 986538 0.40% 6544
chr2 873463 0.36% 5794
chr3 685122 0.35% 4534
chr4 585245 0.31% 3882
chr5 597894 0.33% 3967
chr6 676123 0.40% 4480
chr7 560958 0.35% 3716
chr8 498955 0.34% 3304
chr9 468742 0.34% 3103
chr10 534037 0.40% 3541
chr11 555193 0.41% 3684
chr12 537719 0.40% 3563
chr13 291455 0.25% 1935
chr14 343307 0.32% 2272
chr15 355433 0.35% 2358
chr16 355249 0.39% 2362
chr17 442239 0.53% 2937
chr18 265168 0.33% 1760
chr19 392821 0.67% 2615
chr20 279187 0.43% 1853
chr21 126391 0.27% 840
chr22 183377 0.36% 1217
chrX 313246 0.20% 2071
chrY 1800 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72344 2 504 150.8 150
global segment-length histogram

Files

Filename Size md5
ENCFF384SLZ.bed.gz 698.41 KB 87977dd0bdf62b9afa1ac8b2e613e37b
ENCFF384SLZ.tabix.bed.gz 598.22 KB 085006b0a9f7e012eb08a79e098fa8a2
ENCFF384SLZ.tabix.bed.gz.tbi 361.69 KB 931b5f2b354e5a68888125e24e0a72f7
genomic_resource.yaml 1.39 KB e87c4a6af436fe3f6928a7903cbf9cfa
statistics/