| Id: | DNase-seq/ENCSR951MYM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR951MYM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF122ZIM|/files/ENCFF122ZIM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31003258 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR951MYM | float |
DNase-seq_ENCSR951MYM |
DNase-seq ENCSR951MYM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.291, 55.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF011VIT.bed.gz | 421.01 KB | b12db6eae1aa20a2250bd2d8256c23d4 |
| ENCFF011VIT.bed.gz.dvc | 100.0 B | 4b0d5c6db791283ab79f4b09a287361e |
| ENCFF011VIT.tabix.bed.gz | 380.4 KB | 968d4be1236e66d634e25b4bf80e9e76 |
| ENCFF011VIT.tabix.bed.gz.dvc | 106.0 B | 32b8860d42fa2983c5d1f6d64c31783b |
| ENCFF011VIT.tabix.bed.gz.tbi | 196.5 KB | ad257fcb17559004b4fc14f74c5ea3ec |
| ENCFF011VIT.tabix.bed.gz.tbi.dvc | 110.0 B | 55a82fcea65766600eadb3d28ee834d0 |
| genomic_resource.yaml | 2.23 KB | a5cff8bc1215fa02d9bd0e2124a054c4 |
| genomic_resource_original.yaml | 2.05 KB | eed32a716cf493055d0532bb04f63365 |
| statistics/ |