Resource

Id DNase-seq/ENCSR951MYMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR951MYM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
Description
Labels
  • accession: ENCSR951MYM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • date_created: 2020-04-20T23:45:39.412941+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR951MYM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR951MYM float

DNase-seq_ENCSR951MYM
DNase-seq ENCSR951MYM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR951MYM [0.291, 55.8]
n
6,954,770
mean
7.67
sd
7.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69547700.22% 38093
chr1 727748 0.29% 3967
chr2 466852 0.19% 2569
chr3 377051 0.19% 2073
chr4 242672 0.13% 1303
chr5 296764 0.16% 1650
chr6 387543 0.23% 2100
chr7 329712 0.21% 1833
chr8 248743 0.17% 1384
chr9 281175 0.20% 1535
chr10 294806 0.22% 1618
chr11 359617 0.27% 1971
chr12 350436 0.26% 1921
chr13 136845 0.12% 730
chr14 244635 0.23% 1319
chr15 229189 0.22% 1272
chr16 293554 0.32% 1619
chr17 432164 0.52% 2366
chr18 103181 0.13% 570
chr19 507908 0.87% 2707
chr20 201972 0.31% 1128
chr21 77809 0.17% 433
chr22 173336 0.34% 964
chrX 184522 0.12% 1028
chrY 6536 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38093 11 820 182.57 180
global segment-length histogram

Files

Filename Size md5
ENCFF011VIT.bed.gz 421.01 KB b12db6eae1aa20a2250bd2d8256c23d4
ENCFF011VIT.tabix.bed.gz 380.4 KB 968d4be1236e66d634e25b4bf80e9e76
ENCFF011VIT.tabix.bed.gz.tbi 196.5 KB ad257fcb17559004b4fc14f74c5ea3ec
genomic_resource.yaml 2.23 KB a5cff8bc1215fa02d9bd0e2124a054c4
statistics/