DNase-seq_ENCSR951BNY
DNase-seq ENCSR951BNY [biosample_summary="Homo sapiens H1"]
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| Id: | DNase-seq/ENCSR951BNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR951BNY [biosample_summary="Homo sapiens H1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF801RHD|/files/ENCFF801RHD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF579KRZ|/files/ENCFF579KRZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR951BNY | float |
DNase-seq_ENCSR951BNY |
DNase-seq ENCSR951BNY [biosample_summary="Homo sapiens H1"]
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[0.0395, 11.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF643ZJV.bed.gz | 1.48 MB | 4db5d98f1005965fef6ac44c11049639 |
| ENCFF643ZJV.bed.gz.dvc | 101.0 B | 48c58a9eb0ea321ae377154b7e213fd0 |
| ENCFF643ZJV.tabix.bed.gz | 1.42 MB | 6fea1eb8c1836d9c40a1cdb093315764 |
| ENCFF643ZJV.tabix.bed.gz.dvc | 107.0 B | ff0d6a49fd3d67c2971227537fbba23d |
| ENCFF643ZJV.tabix.bed.gz.tbi | 361.96 KB | 1f81a8d73243fb5ce9e1ccb1cc2a3afc |
| ENCFF643ZJV.tabix.bed.gz.tbi.dvc | 110.0 B | 161a4c6f8fb4b36aa61cfb560cd0e75e |
| genomic_resource.yaml | 2.74 KB | bf55433dae888d7bb4588cbe49410e16 |
| genomic_resource_original.yaml | 2.67 KB | e381fcf328b6f34dc42d6120dc3768de |
| statistics/ |