Resource

Id DNase-seq/ENCSR950YTIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR950YTI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR950YTI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-19T18:36:46.514522+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR950YTI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR950YTI float

DNase-seq_ENCSR950YTI
DNase-seq ENCSR950YTI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR950YTI [0.0672, 56.6]
n
12,450,736
mean
4.41
sd
6.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 124507360.39% 64845
chr1 1219702 0.49% 6288
chr2 921268 0.38% 4816
chr3 601843 0.30% 3174
chr4 422031 0.22% 2178
chr5 534584 0.29% 2817
chr6 642957 0.38% 3374
chr7 604601 0.38% 3136
chr8 517946 0.36% 2709
chr9 564177 0.41% 2881
chr10 553806 0.41% 2941
chr11 667954 0.49% 3556
chr12 579824 0.44% 3042
chr13 242233 0.21% 1247
chr14 459902 0.43% 2404
chr15 388053 0.38% 2073
chr16 511613 0.57% 2665
chr17 749491 0.90% 3852
chr18 208492 0.26% 1066
chr19 749129 1.28% 3838
chr20 364481 0.57% 1905
chr21 195536 0.42% 1022
chr22 368118 0.72% 1883
chrX 382692 0.25% 1975
chrY 303 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64845 1 880 192.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF823DHV.bed.gz 724.5 KB dccf4e1c03070f5f2af1621ef9b8d1db
ENCFF823DHV.tabix.bed.gz 662.95 KB dbd708ba91518b1dd385d4e4eea0a5dd
ENCFF823DHV.tabix.bed.gz.tbi 243.74 KB 585272bfcf8641dd7f5c777281851f2b
genomic_resource.yaml 1.8 KB 23fa38f7d8a9cbb65fd7248fb63c4f95
statistics/