Resource

Id DNase-seq/ENCSR947VPGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR947VPG [biosample_summary="Homo sapiens right lung tissue male embryo (87 days)"]
Description
Labels
  • accession: ENCSR947VPG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue male embryo (87 days)
  • date_created: 2015-09-16T21:42:53.108655+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR947VPG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR947VPG float

DNase-seq_ENCSR947VPG
DNase-seq ENCSR947VPG [biosample_summary="Homo sapiens right lung tissue male embryo (87 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR947VPG [2, 5.04e+03]
n
22,458,174
mean
95.6
sd
161

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224581740.70% 149451
chr1 1953672 0.78% 13000
chr2 1888864 0.78% 12571
chr3 1543595 0.78% 10268
chr4 1249804 0.66% 8316
chr5 1315682 0.72% 8757
chr6 1377932 0.81% 9158
chr7 1175827 0.74% 7827
chr8 1063975 0.73% 7078
chr9 928559 0.67% 6176
chr10 1106485 0.83% 7367
chr11 1120365 0.83% 7453
chr12 1078743 0.81% 7180
chr13 674164 0.59% 4490
chr14 717749 0.67% 4775
chr15 710481 0.70% 4726
chr16 665185 0.74% 4428
chr17 837198 1.01% 5578
chr18 543089 0.68% 3610
chr19 638922 1.09% 4258
chr20 553137 0.86% 3684
chr21 269448 0.58% 1794
chr22 354548 0.70% 2361
chrX 656100 0.42% 4365
chrY 34650 0.06% 231
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 149451 27 450 150.27 150
global segment-length histogram

Files

Filename Size md5
ENCFF664QUB.bed.gz 1.41 MB 76fc804fbd04261b7b0310c793574307
ENCFF664QUB.tabix.bed.gz 1.22 MB 85a1965754b7333eb469860f63aefa7b
ENCFF664QUB.tabix.bed.gz.tbi 625.1 KB d32fce5244951e9b6496b686d527ea97
genomic_resource.yaml 1.39 KB 87ae73540ae058dbc8d5de98684fd710
statistics/