Resource

Id DNase-seq/ENCSR947POCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR947POC [biosample_summary="Homo sapiens brain tissue male embryo (104 days)"]
Description
Labels
  • accession: ENCSR947POC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue male embryo (104 days)
  • date_created: 2015-09-16T21:42:27.379420+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR947POC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (104 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR947POC float

DNase-seq_ENCSR947POC
DNase-seq ENCSR947POC [biosample_summary="Homo sapiens brain tissue male embryo (104 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR947POC [0.179, 42.6]
n
18,669,244
mean
3.17
sd
4.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 186692440.58% 103153
chr1 1612691 0.65% 8955
chr2 1557360 0.64% 8695
chr3 1266448 0.64% 7048
chr4 1034956 0.54% 5735
chr5 1120208 0.62% 6197
chr6 1128770 0.66% 6189
chr7 1006635 0.63% 5590
chr8 939523 0.65% 5200
chr9 774816 0.56% 4275
chr10 883820 0.66% 4887
chr11 937446 0.69% 5164
chr12 932840 0.70% 5124
chr13 562816 0.49% 3132
chr14 622837 0.58% 3389
chr15 552651 0.54% 3022
chr16 567250 0.63% 3121
chr17 675389 0.81% 3701
chr18 463234 0.58% 2568
chr19 539461 0.92% 2807
chr20 477967 0.74% 2662
chr21 200592 0.43% 1118
chr22 288236 0.57% 1602
chrX 504738 0.32% 2864
chrY 18560 0.03% 108
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103153 2 860 180.99 180
global segment-length histogram

Files

Filename Size md5
ENCFF276VUP.bed.gz 1.07 MB 91ffb592b27de71a8a5e2ee7986fe73c
ENCFF276VUP.tabix.bed.gz 987.95 KB 9dd072d6fffb7616c7459bc16f6534f7
ENCFF276VUP.tabix.bed.gz.tbi 492.17 KB d7b1ee6c5f60b711f9aabee114a35a44
genomic_resource.yaml 1.81 KB 143fac3a9ee601567789502dc3c79b39
statistics/