DNase-seq_ENCSR946OIO
DNase-seq ENCSR946OIO [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"]
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| Id: | DNase-seq/ENCSR946OIO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR946OIO [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF932JKV|/files/ENCFF932JKV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR946OIO | float |
DNase-seq_ENCSR946OIO |
DNase-seq ENCSR946OIO [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"]
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[0.0323, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF523NCT.bed.gz | 1.45 MB | b3f205b27941c9c5c824ed429a559c2c |
| ENCFF523NCT.bed.gz.dvc | 101.0 B | e5aab043969b7317f074b87568c3e297 |
| ENCFF523NCT.tabix.bed.gz | 1.37 MB | f67680f2d4fb2c931461065dd4486987 |
| ENCFF523NCT.tabix.bed.gz.dvc | 107.0 B | f7ab54a8dca447418e0a2a96673b1620 |
| ENCFF523NCT.tabix.bed.gz.tbi | 238.03 KB | 4ffe81c3056ed93ce91566dbc13f8b29 |
| ENCFF523NCT.tabix.bed.gz.tbi.dvc | 110.0 B | ef7e2131de3a97456b6d647fe6359d64 |
| genomic_resource.yaml | 2.03 KB | 60efcf04ef41b65a3b5fb6e184cb5a7e |
| genomic_resource_original.yaml | 1.93 KB | 794c94895bb61b8f341c40ec5e185275 |
| statistics/ |