Resource
| Id | DNase-seq/ENCSR946MVP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR946MVP [biosample_summary="Homo sapiens SK-N-DZ"] |
| Description |
status: archived biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN259MMQ|/analyses/ENCAN259MMQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR946MVP | float |
DNase-seq_ENCSR946MVP |
DNase-seq ENCSR946MVP [biosample_summary="Homo sapiens SK-N-DZ"]
|
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[2, 150] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32839000 | 1.02% | 231773 |
| chr1 | 2789210 | 1.12% | 19756 |
| chr2 | 2947830 | 1.22% | 20731 |
| chr3 | 2200440 | 1.11% | 15507 |
| chr4 | 1720220 | 0.90% | 12176 |
| chr5 | 1985450 | 1.09% | 13925 |
| chr6 | 1888760 | 1.11% | 13282 |
| chr7 | 1850420 | 1.16% | 13239 |
| chr8 | 1551060 | 1.07% | 10927 |
| chr9 | 1261980 | 0.91% | 8961 |
| chr10 | 1566370 | 1.17% | 10967 |
| chr11 | 1587100 | 1.17% | 11185 |
| chr12 | 1735100 | 1.30% | 12308 |
| chr13 | 1014670 | 0.89% | 7106 |
| chr14 | 910900 | 0.85% | 6390 |
| chr15 | 982900 | 0.96% | 6941 |
| chr16 | 1099720 | 1.22% | 7741 |
| chr17 | 1360560 | 1.63% | 9658 |
| chr18 | 747230 | 0.93% | 5243 |
| chr19 | 969500 | 1.65% | 6885 |
| chr20 | 860370 | 1.34% | 6024 |
| chr21 | 356240 | 0.76% | 2536 |
| chr22 | 531540 | 1.05% | 3780 |
| chrX | 891280 | 0.57% | 6268 |
| chrY | 30150 | 0.05% | 237 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 231773 | 10 | 350 | 141.69 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF965JJU.bed.gz | 1.97 MB | 89c761b1bc017bd1ac3123351b93e15c |
| ENCFF965JJU.tabix.bed.gz | 1.8 MB | 1d92a132b0aacf26aad5f59cb87c9ef3 |
| ENCFF965JJU.tabix.bed.gz.tbi | 663.88 KB | 7ecb7a66cfc0a6b3ce53d4e4a14c65b3 |
| genomic_resource.yaml | 1.26 KB | 83e9366667c9744a9426f4cfa756d96a |
| statistics/ |
