Resource

Id DNase-seq/ENCSR946MVPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR946MVP [biosample_summary="Homo sapiens SK-N-DZ"]
Description
Labels
  • accession: ENCSR946MVP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005721/
  • biosample_summary: Homo sapiens SK-N-DZ
  • date_created: 2015-03-22T21:31:45.131765+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR946MVP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR946MVP float

DNase-seq_ENCSR946MVP

DNase-seq ENCSR946MVP [biosample_summary="Homo sapiens SK-N-DZ"]
HISTOGRAM FOR DNase-seq_ENCSR946MVP [2, 150]
n
32,839,000
mean
67.9
sd
31.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 328390001.02% 231773
chr1 2789210 1.12% 19756
chr2 2947830 1.22% 20731
chr3 2200440 1.11% 15507
chr4 1720220 0.90% 12176
chr5 1985450 1.09% 13925
chr6 1888760 1.11% 13282
chr7 1850420 1.16% 13239
chr8 1551060 1.07% 10927
chr9 1261980 0.91% 8961
chr10 1566370 1.17% 10967
chr11 1587100 1.17% 11185
chr12 1735100 1.30% 12308
chr13 1014670 0.89% 7106
chr14 910900 0.85% 6390
chr15 982900 0.96% 6941
chr16 1099720 1.22% 7741
chr17 1360560 1.63% 9658
chr18 747230 0.93% 5243
chr19 969500 1.65% 6885
chr20 860370 1.34% 6024
chr21 356240 0.76% 2536
chr22 531540 1.05% 3780
chrX 891280 0.57% 6268
chrY 30150 0.05% 237
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 231773 10 350 141.69 150
global segment-length histogram

Files

Filename Size md5
ENCFF965JJU.bed.gz 1.97 MB 89c761b1bc017bd1ac3123351b93e15c
ENCFF965JJU.tabix.bed.gz 1.8 MB 1d92a132b0aacf26aad5f59cb87c9ef3
ENCFF965JJU.tabix.bed.gz.tbi 663.88 KB 7ecb7a66cfc0a6b3ce53d4e4a14c65b3
genomic_resource.yaml 1.26 KB 83e9366667c9744a9426f4cfa756d96a
statistics/