DNase-seq_ENCSR946DXB
DNase-seq ENCSR946DXB [biosample_summary="Homo sapiens heart left ventricle tissue female embryo (101 days) and female embryo (103 days)"]
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| Id: | DNase-seq/ENCSR946DXB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR946DXB [biosample_summary="Homo sapiens heart left ventricle tissue female embryo (101 days) and female embryo (103 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (101 days) female embryo (103 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF166EZK|/files/ENCFF166EZK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF004ISN|/files/ENCFF004ISN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR946DXB | float |
DNase-seq_ENCSR946DXB |
DNase-seq ENCSR946DXB [biosample_summary="Homo sapiens heart left ventricle tissue female embryo (101 days) and female embryo (103 days)"]
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[0.047, 20.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF017CCG.bed.gz | 1.16 MB | 0da5d14c51e25d7d42a7084d1c9b74aa |
| ENCFF017CCG.bed.gz.dvc | 101.0 B | cd58be69b778ff906952ae88dfe740dd |
| ENCFF017CCG.tabix.bed.gz | 1.06 MB | 1b53dbdd180224d5e056f31a4f119389 |
| ENCFF017CCG.tabix.bed.gz.dvc | 107.0 B | 3ad91d2752b3caa12e67617b0618f0f7 |
| ENCFF017CCG.tabix.bed.gz.tbi | 443.79 KB | 17c6d366e046e2389efce9a6a482eca0 |
| ENCFF017CCG.tabix.bed.gz.tbi.dvc | 110.0 B | c42e753b6451250d1e7e2084fa80a97c |
| genomic_resource.yaml | 3.28 KB | 10c3af1a9e46babcd83461afc8b35654 |
| genomic_resource_original.yaml | 3.15 KB | 902a5cbb0360769a0c240883bc95ae49 |
| statistics/ |