DNase-seq_ENCSR946BPA
DNase-seq ENCSR946BPA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
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| Id: | DNase-seq/ENCSR946BPA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR946BPA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF155GFU|/files/ENCFF155GFU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR946BPA | float |
DNase-seq_ENCSR946BPA |
DNase-seq ENCSR946BPA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
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[0.159, 24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF362WLS.bed.gz | 410.96 KB | 4fe1f5c0acf30080f9a2f1902e6049ee |
| ENCFF362WLS.bed.gz.dvc | 100.0 B | fe27e85350ea708571faed5450367081 |
| ENCFF362WLS.tabix.bed.gz | 374.58 KB | 9fbe9ae7675d29ea0aaaea6387095c03 |
| ENCFF362WLS.tabix.bed.gz.dvc | 106.0 B | 05b7ed2563bd95695b0b43f068479c2b |
| ENCFF362WLS.tabix.bed.gz.tbi | 196.99 KB | dba8b4e1a8f0cf9a8305ab4ec4e4234b |
| ENCFF362WLS.tabix.bed.gz.tbi.dvc | 110.0 B | 35a1377643d6137819010afe21a2356f |
| genomic_resource.yaml | 2.08 KB | 1bff7fb2dff7d02f3e54893e9bc4e7c6 |
| genomic_resource_original.yaml | 1.96 KB | f12e648f3e5282a3aacf598194f9d507 |
| statistics/ |