Resource
| Id | DNase-seq/ENCSR946BPA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR946BPA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF155GFU|/files/ENCFF155GFU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR946BPA | float |
DNase-seq_ENCSR946BPA |
DNase-seq ENCSR946BPA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
|
 |
[0.159, 24] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7444400 | 0.23% | 37293 |
| chr1 | 769347 | 0.31% | 3841 |
| chr2 | 514229 | 0.21% | 2566 |
| chr3 | 403754 | 0.20% | 2020 |
| chr4 | 263184 | 0.14% | 1298 |
| chr5 | 334401 | 0.18% | 1674 |
| chr6 | 427529 | 0.25% | 2134 |
| chr7 | 346688 | 0.22% | 1761 |
| chr8 | 264329 | 0.18% | 1344 |
| chr9 | 296798 | 0.21% | 1490 |
| chr10 | 315738 | 0.24% | 1633 |
| chr11 | 382027 | 0.28% | 1929 |
| chr12 | 380786 | 0.29% | 1893 |
| chr13 | 147860 | 0.13% | 714 |
| chr14 | 263897 | 0.25% | 1292 |
| chr15 | 246091 | 0.24% | 1244 |
| chr16 | 311106 | 0.34% | 1569 |
| chr17 | 464292 | 0.56% | 2326 |
| chr18 | 111380 | 0.14% | 556 |
| chr19 | 511839 | 0.87% | 2509 |
| chr20 | 200947 | 0.31% | 1035 |
| chr21 | 87663 | 0.19% | 443 |
| chr22 | 181725 | 0.36% | 921 |
| chrX | 209620 | 0.13% | 1057 |
| chrY | 9170 | 0.02% | 44 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 37293 | 3 | 760 | 199.62 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF362WLS.bed.gz | 410.96 KB | 4fe1f5c0acf30080f9a2f1902e6049ee |
| ENCFF362WLS.tabix.bed.gz | 374.58 KB | 9fbe9ae7675d29ea0aaaea6387095c03 |
| ENCFF362WLS.tabix.bed.gz.tbi | 196.99 KB | dba8b4e1a8f0cf9a8305ab4ec4e4234b |
| genomic_resource.yaml | 2.08 KB | 1bff7fb2dff7d02f3e54893e9bc4e7c6 |
| statistics/ |