DNase-seq_ENCSR945KSP
DNase-seq ENCSR945KSP [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
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| Id: | DNase-seq/ENCSR945KSP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR945KSP [biosample_summary="Homo sapiens mesothelial cell of epicardium"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF437GFL|/files/ENCFF437GFL/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR945KSP | float |
DNase-seq_ENCSR945KSP |
DNase-seq ENCSR945KSP [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
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[0.107, 15] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF994UOU.bed.gz | 438.63 KB | 4476b2cdb10575967d9c73643e2a2325 |
| ENCFF994UOU.bed.gz.dvc | 100.0 B | 8da0afbe0617b8e02492634f5089f6bb |
| ENCFF994UOU.tabix.bed.gz | 402.24 KB | e20fac32ba99aeba6be0ed6d35ddf557 |
| ENCFF994UOU.tabix.bed.gz.dvc | 106.0 B | 4454b2d4a1ed6575c42263836e618b92 |
| ENCFF994UOU.tabix.bed.gz.tbi | 186.05 KB | 674f07bc597dd12eb902cd6c2183dced |
| ENCFF994UOU.tabix.bed.gz.tbi.dvc | 110.0 B | ed63823b545d99dfb888495079b5febf |
| genomic_resource.yaml | 2.01 KB | 9794e27740d287b63ae929fa9292396d |
| genomic_resource_original.yaml | 1.92 KB | fd48056bc14d668ff2855eb9020ebcaf |
| statistics/ |