Resource

Id DNase-seq/ENCSR945KSPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR945KSP [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
Description
Labels
  • accession: ENCSR945KSP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011019/
  • biosample_summary: Homo sapiens mesothelial cell of epicardium
  • date_created: 2020-12-12T22:20:13.213526+00:00
  • date_released: 2021-02-27
  • doi: 10.17989/ENCSR945KSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR945KSP float

DNase-seq_ENCSR945KSP

DNase-seq ENCSR945KSP [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
HISTOGRAM FOR DNase-seq_ENCSR945KSP [0.107, 15]
n
7,773,933
mean
2.05
sd
1.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77739330.24% 40682
chr1 762789 0.31% 3978
chr2 568321 0.23% 3014
chr3 416510 0.21% 2153
chr4 348027 0.18% 1745
chr5 350478 0.19% 1825
chr6 375386 0.22% 1970
chr7 384708 0.24% 1983
chr8 352077 0.24% 1877
chr9 342953 0.25% 1818
chr10 387426 0.29% 2057
chr11 441770 0.33% 2328
chr12 357069 0.27% 1861
chr13 168951 0.15% 874
chr14 274991 0.26% 1432
chr15 250906 0.25% 1320
chr16 282818 0.31% 1480
chr17 390682 0.47% 2070
chr18 141367 0.18% 741
chr19 427021 0.73% 2185
chr20 230675 0.36% 1250
chr21 115615 0.25% 602
chr22 214546 0.42% 1144
chrX 188345 0.12% 971
chrY 502 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40682 3 1020 191.09 180
global segment-length histogram

Files

Filename Size md5
ENCFF994UOU.bed.gz 438.63 KB 4476b2cdb10575967d9c73643e2a2325
ENCFF994UOU.tabix.bed.gz 402.24 KB e20fac32ba99aeba6be0ed6d35ddf557
ENCFF994UOU.tabix.bed.gz.tbi 186.05 KB 674f07bc597dd12eb902cd6c2183dced
genomic_resource.yaml 2.01 KB 9794e27740d287b63ae929fa9292396d
statistics/