DNase-seq_ENCSR945JJB
DNase-seq ENCSR945JJB [biosample_summary="Homo sapiens lung tissue female adult (47 years)"]
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| Id: | DNase-seq/ENCSR945JJB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR945JJB [biosample_summary="Homo sapiens lung tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF885LCW|/files/ENCFF885LCW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR945JJB | float |
DNase-seq_ENCSR945JJB |
DNase-seq ENCSR945JJB [biosample_summary="Homo sapiens lung tissue female adult (47 years)"]
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[0.0462, 13.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF136IYG.bed.gz | 1006.74 KB | 5bacd9b6888edd2b82cf2a39631e0e2c |
| ENCFF136IYG.bed.gz.dvc | 101.0 B | 8ea318e862f326df75f025380d016215 |
| ENCFF136IYG.tabix.bed.gz | 924.43 KB | c33f8f7e3d49876360a5488cc8ed1159 |
| ENCFF136IYG.tabix.bed.gz.dvc | 106.0 B | 8b544c3f1c43b053d3d8fe78cc701aae |
| ENCFF136IYG.tabix.bed.gz.tbi | 319.15 KB | 7f3884b35c1c022b6a0dd02d85cc8438 |
| ENCFF136IYG.tabix.bed.gz.tbi.dvc | 110.0 B | a4a4058378912a00a6556e3d6f7cb5d6 |
| genomic_resource.yaml | 2.02 KB | eb8614e20b2f2997aad455917a3619a3 |
| genomic_resource_original.yaml | 1.93 KB | 7a55c4ba55f40625869b8da8d51b0060 |
| statistics/ |