DNase-seq_ENCSR944JCE
DNase-seq ENCSR944JCE [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR944JCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR944JCE [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF685OUP|/files/ENCFF685OUP/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.21. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN961YYV|/analyses/ENCAN961YYV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR944JCE | float |
DNase-seq_ENCSR944JCE |
DNase-seq ENCSR944JCE [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)"]
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[3, 8.22e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF146AEB.bed.gz | 3.18 MB | f039b347b6d942075bc44766cfe1d01a |
| ENCFF146AEB.bed.gz.dvc | 101.0 B | 9e5e517fef1e36648fca6907e175033a |
| ENCFF146AEB.tabix.bed.gz | 2.75 MB | 247324352e02e14638ec621df7d9ae74 |
| ENCFF146AEB.tabix.bed.gz.dvc | 107.0 B | 4095baa3be5f970dd3805245cc6fa0d5 |
| ENCFF146AEB.tabix.bed.gz.tbi | 420.68 KB | 1df22143d26f7abeeb3d4197ac0b638b |
| ENCFF146AEB.tabix.bed.gz.tbi.dvc | 110.0 B | 40ed129ed1af804628244c9bc08c8536 |
| genomic_resource.yaml | 2.24 KB | 11c7e1db67b5acf622a73a02069e7ac4 |
| genomic_resource_original.yaml | 2.13 KB | 55c8683be7698739d0f131128af40a23 |
| statistics/ |