Resource

Id DNase-seq/ENCSR944GPHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR944GPH [biosample_summary="Homo sapiens T-helper 22 cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR944GPH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001042/
  • biosample_summary: Homo sapiens T-helper 22 cell female adult (25 years)
  • date_created: 2020-04-13T17:34:06.301910+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR944GPH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR944GPH float

DNase-seq_ENCSR944GPH
DNase-seq ENCSR944GPH [biosample_summary="Homo sapiens T-helper 22 cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR944GPH [0.262, 96.4]
n
7,679,974
mean
9.37
sd
11.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76799740.24% 39916
chr1 795482 0.32% 4125
chr2 521588 0.22% 2733
chr3 404197 0.20% 2123
chr4 247531 0.13% 1283
chr5 336634 0.19% 1782
chr6 445155 0.26% 2317
chr7 353491 0.22% 1839
chr8 275624 0.19% 1436
chr9 305590 0.22% 1584
chr10 339605 0.25% 1772
chr11 398712 0.30% 2083
chr12 387509 0.29% 2016
chr13 149998 0.13% 776
chr14 275123 0.26% 1428
chr15 236514 0.23% 1259
chr16 327079 0.36% 1679
chr17 491281 0.59% 2538
chr18 107243 0.13% 570
chr19 547480 0.93% 2747
chr20 211914 0.33% 1111
chr21 84331 0.18% 440
chr22 192787 0.38% 1012
chrX 244989 0.16% 1262
chrY 117 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39916 1 800 192.4 180
global segment-length histogram

Files

Filename Size md5
ENCFF279UKO.bed.gz 448.86 KB 093b0aff07cd6fe7ecd08ebaf6bac960
ENCFF279UKO.tabix.bed.gz 407.71 KB 96fabb068d9eaa2c1be829db31b23cb7
ENCFF279UKO.tabix.bed.gz.tbi 187.35 KB 820c7543498260061dedcb825952eea8
genomic_resource.yaml 1.83 KB 16aa25c25dfdd5ecd06f73a4964b8be0
statistics/