DNase-seq_ENCSR943SYS
DNase-seq ENCSR943SYS [biosample_summary="Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing GMNN"]
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| Id: | DNase-seq/ENCSR943SYS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR943SYS [biosample_summary="Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing GMNN"] |
| Description: |
status: released biological_replicates: Rep 1 summary: stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G2 phase output_type: peaks audit_internal_action: Archived analysis {ENCAN633OPX|/analyses/ENCAN633OPX/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF602SRQ|/files/ENCFF602SRQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF649ZAQ|/files/ENCFF649ZAQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR943SYS | float |
DNase-seq_ENCSR943SYS |
DNase-seq ENCSR943SYS [biosample_summary="Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing GMNN"]
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[1, 6.65e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF177DSB.bed.gz | 2.47 MB | b6c9fd261f95e05290a2ceadb69e4be6 |
| ENCFF177DSB.bed.gz.dvc | 101.0 B | 9f3c356f3c89b81605a670a9bac87800 |
| ENCFF177DSB.tabix.bed.gz | 2.12 MB | 96bc4ee5a1dc5fb7e804cbf537904ff3 |
| ENCFF177DSB.tabix.bed.gz.dvc | 107.0 B | b3a801537e366592fc94f39e8790431f |
| ENCFF177DSB.tabix.bed.gz.tbi | 756.49 KB | 8d5bdc391a8bc8d8dc5b966b91db5a39 |
| ENCFF177DSB.tabix.bed.gz.tbi.dvc | 110.0 B | 9fb6782df6fbdeede2c8c74a312fc7ee |
| genomic_resource.yaml | 3.21 KB | 37c602d13278ffaadef532c433e36ae8 |
| genomic_resource_original.yaml | 3.1 KB | 85f19ea84d48dba092314b1b3ad6ca1b |
| statistics/ |