Resource
| Id | DNase-seq/ENCSR943MRO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR943MRO [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (85 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (85 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF797VBO|/files/ENCFF797VBO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR943MRO | float |
DNase-seq_ENCSR943MRO |
DNase-seq ENCSR943MRO [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (85 years)"]
|
 |
[0.0813, 27.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15833751 | 0.49% | 87537 |
| chr1 | 1468820 | 0.59% | 8063 |
| chr2 | 1270362 | 0.52% | 7067 |
| chr3 | 921623 | 0.46% | 5109 |
| chr4 | 615369 | 0.32% | 3437 |
| chr5 | 826051 | 0.46% | 4614 |
| chr6 | 795060 | 0.47% | 4441 |
| chr7 | 795983 | 0.50% | 4441 |
| chr8 | 701166 | 0.48% | 3945 |
| chr9 | 705948 | 0.51% | 3903 |
| chr10 | 790413 | 0.59% | 4426 |
| chr11 | 945800 | 0.70% | 5157 |
| chr12 | 722590 | 0.54% | 3968 |
| chr13 | 328725 | 0.29% | 1887 |
| chr14 | 515823 | 0.48% | 2892 |
| chr15 | 545452 | 0.53% | 3007 |
| chr16 | 602544 | 0.67% | 3290 |
| chr17 | 793892 | 0.95% | 4295 |
| chr18 | 299459 | 0.37% | 1706 |
| chr19 | 741845 | 1.27% | 3844 |
| chr20 | 484889 | 0.75% | 2725 |
| chr21 | 184916 | 0.40% | 1038 |
| chr22 | 446183 | 0.88% | 2452 |
| chrX | 330696 | 0.21% | 1829 |
| chrY | 142 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 87537 | 1 | 860 | 180.88 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF355JHP.bed.gz | 961.22 KB | 22743a5390afeb7b1bb19c72e62554d9 |
| ENCFF355JHP.tabix.bed.gz | 871.55 KB | 679000b4a062cdf67cf95e4508e5db3a |
| ENCFF355JHP.tabix.bed.gz.tbi | 373.29 KB | abf86045d5cedd992ff6ed72449471a0 |
| genomic_resource.yaml | 2.08 KB | 3291095e369ea58be695fcbd458ecd80 |
| statistics/ |