DNase-seq_ENCSR943MRO
DNase-seq ENCSR943MRO [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (85 years)"]
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| Id: | DNase-seq/ENCSR943MRO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR943MRO [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (85 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (85 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF797VBO|/files/ENCFF797VBO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR943MRO | float |
DNase-seq_ENCSR943MRO |
DNase-seq ENCSR943MRO [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (85 years)"]
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[0.0813, 27.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF355JHP.bed.gz | 961.22 KB | 22743a5390afeb7b1bb19c72e62554d9 |
| ENCFF355JHP.bed.gz.dvc | 100.0 B | 9856e10df6087e53fae5b40fe06ade16 |
| ENCFF355JHP.tabix.bed.gz | 871.55 KB | 679000b4a062cdf67cf95e4508e5db3a |
| ENCFF355JHP.tabix.bed.gz.dvc | 106.0 B | 47d5820687b1dc3297b266a899bfb3a6 |
| ENCFF355JHP.tabix.bed.gz.tbi | 373.29 KB | abf86045d5cedd992ff6ed72449471a0 |
| ENCFF355JHP.tabix.bed.gz.tbi.dvc | 110.0 B | 5a71cf5968508b9e17b8775b39c61893 |
| genomic_resource.yaml | 2.08 KB | 3291095e369ea58be695fcbd458ecd80 |
| genomic_resource_original.yaml | 1.96 KB | 0c0a60c6f2c84e9a64521ab3feb6af13 |
| statistics/ |