Resource

Id DNase-seq/ENCSR943KMDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR943KMD [biosample_summary="Homo sapiens T-helper 2 cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR943KMD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (38 years)
  • date_created: 2020-04-16T03:32:07.318868+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR943KMD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR943KMD float

DNase-seq_ENCSR943KMD

DNase-seq ENCSR943KMD [biosample_summary="Homo sapiens T-helper 2 cell male adult (38 years)"]
HISTOGRAM FOR DNase-seq_ENCSR943KMD [0.117, 99.9]
n
8,477,438
mean
8.59
sd
12.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84774380.26% 45859
chr1 873225 0.35% 4721
chr2 569616 0.24% 3062
chr3 435315 0.22% 2349
chr4 295182 0.16% 1612
chr5 364404 0.20% 1964
chr6 485878 0.28% 2613
chr7 388966 0.24% 2125
chr8 306672 0.21% 1681
chr9 342096 0.25% 1848
chr10 362362 0.27% 1978
chr11 458988 0.34% 2494
chr12 434458 0.33% 2356
chr13 161252 0.14% 863
chr14 312471 0.29% 1681
chr15 264862 0.26% 1453
chr16 344847 0.38% 1853
chr17 515807 0.62% 2787
chr18 127147 0.16% 694
chr19 605460 1.03% 3179
chr20 239985 0.37% 1323
chr21 106480 0.23% 599
chr22 210690 0.41% 1161
chrX 262333 0.17% 1413
chrY 8942 0.02% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45859 4 760 184.86 180
global segment-length histogram

Files

Filename Size md5
ENCFF334WLQ.bed.gz 523.95 KB d7a419baf967de1008433c221a1c85c9
ENCFF334WLQ.tabix.bed.gz 476.88 KB fa1941c36129d9cf6cc6f5059b9a53c3
ENCFF334WLQ.tabix.bed.gz.tbi 209.04 KB e7e3c93ffaeccdb265b228a664fd29b1
genomic_resource.yaml 1.21 KB ae6fdeac32cbeaa817069ec35fe1f2d7
statistics/