Resource

Id DNase-seq/ENCSR940UEKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR940UEK [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-10 for 1 hour"]
Description
Labels
  • accession: ENCSR940UEK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-10 for 1 hour
  • date_created: 2018-11-30T18:43:54.018541+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR940UEK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-10 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR940UEK float

DNase-seq_ENCSR940UEK
DNase-seq ENCSR940UEK [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-10 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR940UEK [0.0274, 85.8]
n
18,256,937
mean
4.48
sd
8.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 182569370.57% 91355
chr1 1818608 0.73% 9033
chr2 1352803 0.56% 6801
chr3 1034222 0.52% 5237
chr4 673290 0.35% 3423
chr5 850785 0.47% 4282
chr6 1117934 0.65% 5493
chr7 870924 0.55% 4408
chr8 702869 0.48% 3579
chr9 719574 0.52% 3676
chr10 853735 0.64% 4298
chr11 925521 0.69% 4625
chr12 943532 0.71% 4741
chr13 408845 0.36% 2054
chr14 659923 0.62% 3268
chr15 579415 0.57% 2944
chr16 673619 0.75% 3362
chr17 1015670 1.22% 5008
chr18 308502 0.38% 1573
chr19 1048178 1.79% 4993
chr20 499236 0.77% 2514
chr21 213076 0.46% 1055
chr22 399514 0.79% 2013
chrX 559745 0.36% 2823
chrY 27417 0.05% 152
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91355 5 1140 199.85 200
global segment-length histogram

Files

Filename Size md5
ENCFF397KNY.bed.gz 1.0 MB 09117de3ef01dfd690740fd95a79675d
ENCFF397KNY.tabix.bed.gz 940.55 KB e7f50a70e8a126fd3d8906777c41193f
ENCFF397KNY.tabix.bed.gz.tbi 345.82 KB 3840eb35b251551e9d21e7414319f8f8
genomic_resource.yaml 1.46 KB 2ea87260411b89ea1fc240fd3cb695db
statistics/