Resource

Id DNase-seq/ENCSR940NLNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR940NLN [biosample_summary="Homo sapiens PC-9"]
Description
Labels
  • accession: ENCSR940NLN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-09-26T06:22:10.364388+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR940NLN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR940NLN float

DNase-seq_ENCSR940NLN
DNase-seq ENCSR940NLN [biosample_summary="Homo sapiens PC-9"]
 HISTOGRAM FOR DNase-seq_ENCSR940NLN [1, 2.61e+04]
n
39,632,821
mean
287
sd
569

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 396328211.23% 263785
chr1 3897426 1.57% 25939
chr2 3833293 1.58% 25506
chr3 2776882 1.40% 18479
chr4 1410819 0.74% 9390
chr5 2379834 1.31% 15836
chr6 2427279 1.42% 16156
chr7 2609379 1.64% 17366
chr8 1648357 1.14% 10972
chr9 1303981 0.94% 8681
chr10 1520588 1.14% 10129
chr11 2846557 2.11% 18935
chr12 1590081 1.19% 10588
chr13 967590 0.85% 6441
chr14 1110005 1.04% 7392
chr15 936602 0.92% 6240
chr16 1160294 1.28% 7717
chr17 1441854 1.73% 9605
chr18 729252 0.91% 4854
chr19 1471637 2.51% 9792
chr20 1314677 2.04% 8756
chr21 326313 0.70% 2172
chr22 794845 1.56% 5286
chrX 1099338 0.70% 7313
chrY 35938 0.06% 240
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 263785 5 450 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF364RGE.bed.gz 2.52 MB 89f3f8d66e6d27af12faaf1b7ea3605e
ENCFF364RGE.tabix.bed.gz 2.16 MB 092ea19bbde127d4cb20fb8002e41a0a
ENCFF364RGE.tabix.bed.gz.tbi 628.93 KB d1a4491732c4e08c1439bb62e06bb6f2
genomic_resource.yaml 1.25 KB 252566e393bf9084803ce778cade3f3d
statistics/