Resource

Id DNase-seq/ENCSR940CXUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR940CXU [biosample_summary="Homo sapiens endodermal cell originated from H1"]
Description
Labels
  • accession: ENCSR940CXU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000223/
  • biosample_summary: Homo sapiens endodermal cell originated from H1
  • date_created: 2021-11-02T21:53:43.952372+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR940CXU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR940CXU float

DNase-seq_ENCSR940CXU
DNase-seq ENCSR940CXU [biosample_summary="Homo sapiens endodermal cell originated from H1"]
 HISTOGRAM FOR DNase-seq_ENCSR940CXU [0.0207, 16.7]
n
50,810,956
mean
0.593
sd
0.894

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 508109561.58% 248539
chr1 4930817 1.98% 23655
chr2 4500096 1.86% 21858
chr3 2640923 1.33% 13130
chr4 1566683 0.82% 7710
chr5 2500609 1.38% 12295
chr6 2163649 1.27% 10873
chr7 2608104 1.64% 12729
chr8 2365643 1.63% 11571
chr9 2282024 1.65% 11113
chr10 3206583 2.40% 15559
chr11 3008236 2.23% 14461
chr12 1904133 1.43% 9541
chr13 1119330 0.98% 5548
chr14 1721655 1.61% 8369
chr15 2008312 1.97% 9858
chr16 1953791 2.16% 9674
chr17 2675562 3.21% 13029
chr18 1041043 1.30% 5288
chr19 1695828 2.89% 8418
chr20 1682452 2.61% 8281
chr21 926124 1.98% 4413
chr22 1590384 3.13% 7454
chrX 699163 0.45% 3596
chrY 19812 0.03% 116
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 248539 1 1040 204.44 188
global segment-length histogram

Files

Filename Size md5
ENCFF999SYR.bed.gz 2.43 MB 5fc7d4ecd46a4df5ab6c4eaf8dd6cc75
ENCFF999SYR.tabix.bed.gz 2.3 MB 638bef8e43b19a9c3510f63dd303ee1a
ENCFF999SYR.tabix.bed.gz.tbi 385.27 KB f5b334dad27392332bc260633958d31e
genomic_resource.yaml 2.0 KB 1de4adfb31cfa0616f66a5d073fac363
statistics/