DNase-seq_ENCSR940CXU
DNase-seq ENCSR940CXU [biosample_summary="Homo sapiens endodermal cell originated from H1"]
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| Id: | DNase-seq/ENCSR940CXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR940CXU [biosample_summary="Homo sapiens endodermal cell originated from H1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF953MMX|/files/ENCFF953MMX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR940CXU | float |
DNase-seq_ENCSR940CXU |
DNase-seq ENCSR940CXU [biosample_summary="Homo sapiens endodermal cell originated from H1"]
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[0.0207, 16.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF999SYR.bed.gz | 2.43 MB | 5fc7d4ecd46a4df5ab6c4eaf8dd6cc75 |
| ENCFF999SYR.bed.gz.dvc | 101.0 B | c8c92dfe8470a317401b4a8fd683d524 |
| ENCFF999SYR.tabix.bed.gz | 2.3 MB | 638bef8e43b19a9c3510f63dd303ee1a |
| ENCFF999SYR.tabix.bed.gz.dvc | 107.0 B | 730660cde04fbd6025653f6ff9bfd175 |
| ENCFF999SYR.tabix.bed.gz.tbi | 385.27 KB | f5b334dad27392332bc260633958d31e |
| ENCFF999SYR.tabix.bed.gz.tbi.dvc | 110.0 B | 207623796e59add073304c56d36a7c9e |
| genomic_resource.yaml | 2.0 KB | 1de4adfb31cfa0616f66a5d073fac363 |
| genomic_resource_original.yaml | 1.91 KB | c848d1fe52c5ba5ea7995be665010a64 |
| statistics/ |