DNase-seq_ENCSR938UOR
DNase-seq ENCSR938UOR [biosample_summary="Homo sapiens muscle of leg tissue female embryo (115 days)"]
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| Id: | DNase-seq/ENCSR938UOR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR938UOR [biosample_summary="Homo sapiens muscle of leg tissue female embryo (115 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: peaks audit_warning: Alignment file {ENCFF956NIR|/files/ENCFF956NIR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 20760260 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF956NIR|/files/ENCFF956NIR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR938UOR | float |
DNase-seq_ENCSR938UOR |
DNase-seq ENCSR938UOR [biosample_summary="Homo sapiens muscle of leg tissue female embryo (115 days)"]
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[0.387, 12.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF055FYP.bed.gz | 236.65 KB | 31dab0062b1a721506104eaa6ae0ab26 |
| ENCFF055FYP.bed.gz.dvc | 100.0 B | e4aef4f8800877348f4fe5c4607ecf51 |
| ENCFF055FYP.tabix.bed.gz | 210.88 KB | c0c69f3c9c05f9ca9ebe3a7fe8c726ad |
| ENCFF055FYP.tabix.bed.gz.dvc | 106.0 B | 2d2fbf9ad5e6a3bba621346568bba5ed |
| ENCFF055FYP.tabix.bed.gz.tbi | 149.79 KB | f7f093930bed0cce745fcbd364de845f |
| ENCFF055FYP.tabix.bed.gz.tbi.dvc | 110.0 B | c0167865356164aaf666987b96f8586f |
| genomic_resource.yaml | 2.67 KB | ce1773aa25b20aab5a14782c27595e39 |
| genomic_resource_original.yaml | 2.57 KB | 8a509bf95ca774c602fdc0abfead0baa |
| statistics/ |