Resource

Id DNase-seq/ENCSR937NLHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR937NLH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR937NLH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:37:00.020435+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR937NLH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR937NLH float

DNase-seq_ENCSR937NLH
DNase-seq ENCSR937NLH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR937NLH [0.187, 39.4]
n
8,478,643
mean
4.6
sd
5.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84786430.26% 44075
chr1 864232 0.35% 4489
chr2 589272 0.24% 3050
chr3 465385 0.23% 2405
chr4 290514 0.15% 1488
chr5 359288 0.20% 1874
chr6 486130 0.28% 2503
chr7 390187 0.24% 2055
chr8 302802 0.21% 1614
chr9 343357 0.25% 1808
chr10 373906 0.28% 1950
chr11 437385 0.32% 2298
chr12 434962 0.33% 2247
chr13 169404 0.15% 867
chr14 293001 0.27% 1498
chr15 276596 0.27% 1443
chr16 352670 0.39% 1833
chr17 532549 0.64% 2767
chr18 131617 0.16% 686
chr19 587771 1.00% 2957
chr20 238080 0.37% 1290
chr21 99926 0.21% 523
chr22 205279 0.40% 1094
chrX 243911 0.16% 1281
chrY 10419 0.02% 55
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44075 2 760 192.37 180
global segment-length histogram

Files

Filename Size md5
ENCFF549FIG.bed.gz 490.57 KB ffaf66cbb228f1f35b696491687583e0
ENCFF549FIG.tabix.bed.gz 446.39 KB 7884ec6bec7075aa8cbbe78e4ecdca1b
ENCFF549FIG.tabix.bed.gz.tbi 222.25 KB 921fb6c079f706eae4c7aed7dac8dd82
genomic_resource.yaml 1.26 KB c901b0f7a698e0f38d2ab9b9bb975e3c
statistics/