| Id: | DNase-seq/ENCSR932OSG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR932OSG [biosample_summary="Homo sapiens activated T-helper 1 cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF943AFY|/files/ENCFF943AFY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR932OSG | float |
DNase-seq_ENCSR932OSG |
DNase-seq ENCSR932OSG [biosample_summary="Homo sapiens activated T-helper 1 cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.133, 27.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF760ZCG.bed.gz | 352.16 KB | cd9f1399e7a442a61c12307403f77159 |
| ENCFF760ZCG.bed.gz.dvc | 100.0 B | a71a3df0cdde89eb5191e57f8d7e045c |
| ENCFF760ZCG.tabix.bed.gz | 320.98 KB | 23c9f016fc1f35a06e7718d165569177 |
| ENCFF760ZCG.tabix.bed.gz.dvc | 106.0 B | 5bfa9ef56ae20c05781a95144ed2a5ab |
| ENCFF760ZCG.tabix.bed.gz.tbi | 167.16 KB | aacee4346043cf8ce1be37f6512f7456 |
| ENCFF760ZCG.tabix.bed.gz.tbi.dvc | 110.0 B | ce57c9833fe2f1ec3305d1ff5a95a662 |
| genomic_resource.yaml | 2.72 KB | 0bf211c4fc268f1f37ce55bf23ff02d4 |
| genomic_resource_original.yaml | 2.52 KB | 7fb28f316d1f99f1df8b031281ab2ce1 |
| statistics/ |