DNase-seq_ENCSR932KWJ
DNase-seq ENCSR932KWJ [biosample_summary="Homo sapiens A172"]
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| Id: | DNase-seq/ENCSR932KWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR932KWJ [biosample_summary="Homo sapiens A172"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF567HRE|/files/ENCFF567HRE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR932KWJ | float |
DNase-seq_ENCSR932KWJ |
DNase-seq ENCSR932KWJ [biosample_summary="Homo sapiens A172"]
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[0.0503, 25.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693MBQ.bed.gz | 1.83 MB | 202b58f17eb77c73eeddbb6c7b08d6c3 |
| ENCFF693MBQ.bed.gz.dvc | 101.0 B | 1bac624dcfaf41489583fdf62d7d12e3 |
| ENCFF693MBQ.tabix.bed.gz | 1.67 MB | ede1c47e49fe91d57ca9c781c584abb0 |
| ENCFF693MBQ.tabix.bed.gz.dvc | 107.0 B | 0ebcf4dc48fa0ac236d36a90d4f5aca8 |
| ENCFF693MBQ.tabix.bed.gz.tbi | 607.37 KB | acc259c98d4f770a7c43a602be4a4582 |
| ENCFF693MBQ.tabix.bed.gz.tbi.dvc | 110.0 B | 231c0adecdf15a1cb499872c1abe53a2 |
| genomic_resource.yaml | 1.91 KB | 1b76f7cf3d9b929cba63b803de4a9d33 |
| genomic_resource_original.yaml | 1.84 KB | 69df4f139114af8622714feb71d99bb6 |
| statistics/ |