Resource

Id DNase-seq/ENCSR932DHTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR932DHT [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR932DHT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:34.560930+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR932DHT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR932DHT float

DNase-seq_ENCSR932DHT
DNase-seq ENCSR932DHT [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR932DHT [0.215, 22.9]
n
11,765,388
mean
2.91
sd
2.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117653880.37% 62951
chr1 1082843 0.43% 5744
chr2 891330 0.37% 4815
chr3 746135 0.38% 4035
chr4 608389 0.32% 3247
chr5 639757 0.35% 3402
chr6 707551 0.41% 3717
chr7 600308 0.38% 3256
chr8 520691 0.36% 2811
chr9 492998 0.36% 2620
chr10 563186 0.42% 3047
chr11 603789 0.45% 3226
chr12 611568 0.46% 3223
chr13 293805 0.26% 1575
chr14 393969 0.37% 2088
chr15 380681 0.37% 2042
chr16 397009 0.44% 2131
chr17 501259 0.60% 2672
chr18 270548 0.34% 1477
chr19 510856 0.87% 2614
chr20 301733 0.47% 1646
chr21 127107 0.27% 698
chr22 199611 0.39% 1097
chrX 319985 0.21% 1766
chrY 280 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62951 3 1240 186.9 180
global segment-length histogram

Files

Filename Size md5
ENCFF341YUR.bed.gz 664.79 KB 2ac1fd6f2a83e4208decb596e3d9ea7d
ENCFF341YUR.tabix.bed.gz 596.03 KB 3e96feff01f44c0f956dfc04e79405ad
ENCFF341YUR.tabix.bed.gz.tbi 325.42 KB f3f9966cfcbfcac30b46215bfff3637e
genomic_resource.yaml 1.88 KB c65ea49c1cd92fba817b39bca470a2a8
statistics/