DNase-seq_ENCSR930YSB
DNase-seq ENCSR930YSB [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
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| Id: | DNase-seq/ENCSR930YSB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR930YSB [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN587MNH|/analyses/ENCAN587MNH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF594MMQ|/files/ENCFF594MMQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR930YSB | float |
DNase-seq_ENCSR930YSB |
DNase-seq ENCSR930YSB [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
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[4, 1.86e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF749DUT.bed.gz | 1.04 MB | 50b0226b95659efb8279834987cc1565 |
| ENCFF749DUT.bed.gz.dvc | 101.0 B | 6a137d3fb87d02a12dfb7f322734ddbc |
| ENCFF749DUT.tabix.bed.gz | 913.52 KB | d0f334cf7cb1fcd3784b51bfd68b7c03 |
| ENCFF749DUT.tabix.bed.gz.dvc | 106.0 B | 10782a187ef7b5be87ca2cb847822c0f |
| ENCFF749DUT.tabix.bed.gz.tbi | 464.71 KB | 2fe252bfc9f5f0dafb265f6e42ab7c2a |
| ENCFF749DUT.tabix.bed.gz.tbi.dvc | 110.0 B | 99ba5aa95a7a3a26cfcdf83479e6c876 |
| genomic_resource.yaml | 2.19 KB | 83c95d28d4bf1dd854d66bfcc6b26423 |
| genomic_resource_original.yaml | 2.09 KB | 049b630d78c18c99f07992bc0e89904c |
| statistics/ |