Resource

Id DNase-seq/ENCSR930USXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR930USX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR930USX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2020-04-20T23:45:42.199228+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR930USX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR930USX float

DNase-seq_ENCSR930USX
DNase-seq ENCSR930USX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR930USX [0.211, 84]
n
9,180,042
mean
7.87
sd
9.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91800420.29% 50322
chr1 933139 0.37% 5105
chr2 624781 0.26% 3443
chr3 494705 0.25% 2679
chr4 308941 0.16% 1674
chr5 399183 0.22% 2181
chr6 528188 0.31% 2894
chr7 414543 0.26% 2286
chr8 336782 0.23% 1858
chr9 375255 0.27% 2056
chr10 406777 0.30% 2260
chr11 471275 0.35% 2599
chr12 476528 0.36% 2615
chr13 184051 0.16% 999
chr14 319578 0.30% 1752
chr15 299887 0.29% 1658
chr16 389774 0.43% 2128
chr17 574873 0.69% 3118
chr18 141328 0.18% 784
chr19 607541 1.04% 3283
chr20 263770 0.41% 1460
chr21 113396 0.24% 614
chr22 233575 0.46% 1304
chrX 272942 0.17% 1522
chrY 9230 0.02% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50322 3 800 182.43 180
global segment-length histogram

Files

Filename Size md5
ENCFF433ZLN.bed.gz 564.81 KB 8567deba5731958bee912b074bf8df6d
ENCFF433ZLN.tabix.bed.gz 513.89 KB 92066a9105ba679afd373503cc93911e
ENCFF433ZLN.tabix.bed.gz.tbi 232.43 KB ec16578e3d06abea9278afbd0127eebd
genomic_resource.yaml 1.26 KB b1c909f4c961cc82791d76d6c4919005
statistics/