DNase-seq_ENCSR928WMU
DNase-seq ENCSR928WMU [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)"]
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| Id: | DNase-seq/ENCSR928WMU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR928WMU [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF850ISE|/files/ENCFF850ISE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR928WMU | float |
DNase-seq_ENCSR928WMU |
DNase-seq ENCSR928WMU [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)"]
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[0.044, 20] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF461LFX.bed.gz | 914.24 KB | fd86ad67060779cf163414fcca21a5e1 |
| ENCFF461LFX.bed.gz.dvc | 100.0 B | 5d9f1f9d5929fe911b4048ae11a37352 |
| ENCFF461LFX.tabix.bed.gz | 828.99 KB | ac981749502d0d72dd0a3de6f4ee6871 |
| ENCFF461LFX.tabix.bed.gz.dvc | 106.0 B | e13303231d4975b3f68603af76d47f67 |
| ENCFF461LFX.tabix.bed.gz.tbi | 356.0 KB | bcc1b939dc2219d63f0742ae13c2fd69 |
| ENCFF461LFX.tabix.bed.gz.tbi.dvc | 110.0 B | de96ac560eefa6b228a6a4e551c194dd |
| genomic_resource.yaml | 2.06 KB | bea39b0ceec9399c0d57d6ce379dc876 |
| genomic_resource_original.yaml | 1.95 KB | 70794f7fbd23b50473b33c81e4c009a7 |
| statistics/ |