DNase-seq_ENCSR928PKL
DNase-seq ENCSR928PKL [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)"]
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| Id: | DNase-seq/ENCSR928PKL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR928PKL [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF479FLN|/files/ENCFF479FLN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR928PKL | float |
DNase-seq_ENCSR928PKL |
DNase-seq ENCSR928PKL [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)"]
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[0.109, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803KTY.bed.gz | 493.52 KB | 3ac06217234e43eb4362f413d8234655 |
| ENCFF803KTY.bed.gz.dvc | 100.0 B | 8c9acd2c5292577ba6bfa68e5a2e3f7e |
| ENCFF803KTY.tabix.bed.gz | 445.56 KB | 8119f8a3044f2f78a96b22da4224369c |
| ENCFF803KTY.tabix.bed.gz.dvc | 106.0 B | dea88e3873fa39f2a54f3634786df4dc |
| ENCFF803KTY.tabix.bed.gz.tbi | 230.98 KB | 1c7b79d1b55377ddf7c52e9f05e4d15f |
| ENCFF803KTY.tabix.bed.gz.tbi.dvc | 110.0 B | a53577198ce93203adbad8a8fa1603cd |
| genomic_resource.yaml | 2.22 KB | 65fd74312dc81c7282bfe9be282e8db9 |
| genomic_resource_original.yaml | 2.08 KB | f3058bfbf80589f6aaa5a025c7c92653 |
| statistics/ |