DNase-seq_ENCSR926SNI
DNase-seq ENCSR926SNI [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
×
| Id: | DNase-seq/ENCSR926SNI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR926SNI [biosample_summary="Homo sapiens T-cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Alignment file {ENCFF252DLW|/files/ENCFF252DLW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29004262 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF252DLW|/files/ENCFF252DLW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR926SNI | float |
DNase-seq_ENCSR926SNI |
DNase-seq ENCSR926SNI [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
|
|
[0.45, 32] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF436SLI.bed.gz | 285.57 KB | 269024531672a4e9986cfe04bee5ee13 |
| ENCFF436SLI.bed.gz.dvc | 100.0 B | 247ebc3f0663dec1785e51e4c7561e0a |
| ENCFF436SLI.tabix.bed.gz | 258.01 KB | 5fab6729c5a2b7e45d3d85417564e274 |
| ENCFF436SLI.tabix.bed.gz.dvc | 106.0 B | 9c44374245e5069f5dec29324548bbeb |
| ENCFF436SLI.tabix.bed.gz.tbi | 160.47 KB | 7c5816faff9ead9c04d27b5ae4680eed |
| ENCFF436SLI.tabix.bed.gz.tbi.dvc | 110.0 B | c84ac373dd8224dbc0b7bdb5aa9356f5 |
| genomic_resource.yaml | 2.62 KB | fed2945222aec01f34794d02e8552c86 |
| genomic_resource_original.yaml | 2.53 KB | 83176e16bc358c360d948319ad2970ca |
| statistics/ |