DNase-seq_ENCSR923JYH
DNase-seq ENCSR923JYH [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR923JYH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR923JYH [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN195KIO|/analyses/ENCAN195KIO/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF707FHL|/files/ENCFF707FHL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR923JYH | float |
DNase-seq_ENCSR923JYH |
DNase-seq ENCSR923JYH [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
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[7, 9.35e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF484EYC.bed.gz | 526.13 KB | 8e9279bb169cc6f7499e0ec3473a7e17 |
| ENCFF484EYC.bed.gz.dvc | 100.0 B | eecb5ebc978a9a4cf13ae727f2a2ca11 |
| ENCFF484EYC.tabix.bed.gz | 446.97 KB | d4d3b138e7da9bc1c2fd68d9b6102bd7 |
| ENCFF484EYC.tabix.bed.gz.dvc | 106.0 B | 09c72b09f8dbfba93b9a0a33465bf109 |
| ENCFF484EYC.tabix.bed.gz.tbi | 274.77 KB | 97f83fec97bdc406c1c384dab74b7c79 |
| ENCFF484EYC.tabix.bed.gz.tbi.dvc | 110.0 B | b695fe706faf2be1904793b0d59a7e4a |
| genomic_resource.yaml | 2.21 KB | 7f9c4819d258117ba1190db4bda637e1 |
| genomic_resource_original.yaml | 2.1 KB | 6abda80dab45bd191fea3f3b9367d41a |
| statistics/ |