DNase-seq_ENCSR923BEY
DNase-seq ENCSR923BEY [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR923BEY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR923BEY [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF610GJO|/files/ENCFF610GJO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR923BEY | float |
DNase-seq_ENCSR923BEY |
DNase-seq ENCSR923BEY [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0721, 12.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF243HGU.bed.gz | 565.59 KB | 422237b4c397db469a7e704a41b7bb0f |
| ENCFF243HGU.bed.gz.dvc | 100.0 B | 3e054a42b7cf26303bfa7cc18f323c29 |
| ENCFF243HGU.tabix.bed.gz | 515.47 KB | d17778a49596223fad5c38fda9df5d0a |
| ENCFF243HGU.tabix.bed.gz.dvc | 106.0 B | f0be0772ccec2ad6dbea44deefaad130 |
| ENCFF243HGU.tabix.bed.gz.tbi | 246.75 KB | 46b4138cf83975b27a305e460123b419 |
| ENCFF243HGU.tabix.bed.gz.tbi.dvc | 110.0 B | aca13efb56718cf830db0bbb697814aa |
| genomic_resource.yaml | 2.28 KB | a0f02eaa095b591ac1053d82f0627e3e |
| genomic_resource_original.yaml | 2.12 KB | b1230ab6303efcba3e36d1a25b13c1ac |
| statistics/ |