DNase-seq_ENCSR922YEW
DNase-seq ENCSR922YEW [biosample_summary="Homo sapiens placenta tissue female embryo"]
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| Id: | DNase-seq/ENCSR922YEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR922YEW [biosample_summary="Homo sapiens placenta tissue female embryo"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF847XBC|/files/ENCFF847XBC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR922YEW | float |
DNase-seq_ENCSR922YEW |
DNase-seq ENCSR922YEW [biosample_summary="Homo sapiens placenta tissue female embryo"]
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[0.0287, 20.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF259CAA.bed.gz | 2.08 MB | 6269bf7b784d9d68f399a71ae4ff6d0a |
| ENCFF259CAA.bed.gz.dvc | 101.0 B | 22f6fc8a078801e7104fb7c2f8ee7320 |
| ENCFF259CAA.tabix.bed.gz | 1.94 MB | c9a7a2cfc6a61e5d55e2567eee20a327 |
| ENCFF259CAA.tabix.bed.gz.dvc | 107.0 B | 05ec8e9261f4f2d6681e1b7c845e18bc |
| ENCFF259CAA.tabix.bed.gz.tbi | 375.82 KB | b5b78054dd4257d7a61f745c4fe6010c |
| ENCFF259CAA.tabix.bed.gz.tbi.dvc | 110.0 B | 1a976ac2b729b0111efcb4088c3c9f5f |
| genomic_resource.yaml | 1.98 KB | b2c9e96b3d9dccf8d601bf9e4037ab56 |
| genomic_resource_original.yaml | 1.89 KB | d82de3dd4b54a561684c2b1836add840 |
| statistics/ |