DNase-seq_ENCSR921PPJ
DNase-seq ENCSR921PPJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years)"]
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| Id: | DNase-seq/ENCSR921PPJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR921PPJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (83 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF054OWB|/files/ENCFF054OWB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR921PPJ | float |
DNase-seq_ENCSR921PPJ |
DNase-seq ENCSR921PPJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years)"]
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[0.0946, 19.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF752ZTJ.bed.gz | 640.96 KB | a015d25da6e78070b3bab21a363841e2 |
| ENCFF752ZTJ.bed.gz.dvc | 100.0 B | 572b231be00a32a9c6098aeb0b86d667 |
| ENCFF752ZTJ.tabix.bed.gz | 579.92 KB | 3bf6b5001143d8f25905dd2df297eae4 |
| ENCFF752ZTJ.tabix.bed.gz.dvc | 106.0 B | 7d077bb915669bbfbeb88b4bf91056bd |
| ENCFF752ZTJ.tabix.bed.gz.tbi | 276.59 KB | 72756d67195a2a921e4da8a3ba47cd2b |
| ENCFF752ZTJ.tabix.bed.gz.tbi.dvc | 110.0 B | cba72f6c2166fa7b226ca77a7f2ba679 |
| genomic_resource.yaml | 2.26 KB | a538e45502c9025bf41a80688e0919bf |
| genomic_resource_original.yaml | 2.11 KB | 7bd69f69dcb2d84c8d98ff45c1d2f02d |
| statistics/ |