| Id: | DNase-seq/ENCSR917BSW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR917BSW [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF438VZH|/files/ENCFF438VZH/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR917BSW | float |
DNase-seq_ENCSR917BSW |
DNase-seq ENCSR917BSW [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours"]
|
 |
[0.036, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF449NOH.bed.gz | 1.2 MB | 6dd227675fff23ffa2a23d4c45eef6be |
| ENCFF449NOH.bed.gz.dvc | 101.0 B | df1566fbb6045625427ded1190c166eb |
| ENCFF449NOH.tabix.bed.gz | 1.14 MB | f419cad005d6d50ad68a242ab56550e7 |
| ENCFF449NOH.tabix.bed.gz.dvc | 107.0 B | f5c47a1f66d04d320c1cd95a7ef251a4 |
| ENCFF449NOH.tabix.bed.gz.tbi | 288.47 KB | 625c9daf25ac1aa05c69339136bc2de0 |
| ENCFF449NOH.tabix.bed.gz.tbi.dvc | 110.0 B | b6351d94901ae4c76ba71a927d79f37b |
| genomic_resource.yaml | 3.02 KB | 9e2a369c39f04a6a35dd3138189c8fe3 |
| genomic_resource_original.yaml | 2.72 KB | 7d102d7c39c58315c107e0063f4b9467 |
| statistics/ |