DNase-seq_ENCSR916MHX
DNase-seq ENCSR916MHX [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (78 years)"]
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| Id: | DNase-seq/ENCSR916MHX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR916MHX [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF533IMD|/files/ENCFF533IMD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR916MHX | float |
DNase-seq_ENCSR916MHX |
DNase-seq ENCSR916MHX [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (78 years)"]
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[0.0649, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF037ADM.bed.gz | 815.78 KB | bc7d5317b1c229cfaa5b103bec2a529b |
| ENCFF037ADM.bed.gz.dvc | 100.0 B | a7e74c20780ae2a1a459f53fb9b5bb2c |
| ENCFF037ADM.tabix.bed.gz | 740.22 KB | 7c3b89eeb6ab9eedc45357a17cd1581d |
| ENCFF037ADM.tabix.bed.gz.dvc | 106.0 B | a6c31abec0734ceaf0e79c16198f01a6 |
| ENCFF037ADM.tabix.bed.gz.tbi | 344.07 KB | baac24f244b58506f597ed3e096c0ad9 |
| ENCFF037ADM.tabix.bed.gz.tbi.dvc | 110.0 B | f363f7a70e804205f4fba8ab70c45876 |
| genomic_resource.yaml | 2.07 KB | 6831ba7ef77c607fdd122470c087bf59 |
| genomic_resource_original.yaml | 1.96 KB | de51436a02cc7428dd60b23648c8c2e9 |
| statistics/ |