Resource
| Id | DNase-seq/ENCSR916MHX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR916MHX [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (78 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF533IMD|/files/ENCFF533IMD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR916MHX | float |
DNase-seq_ENCSR916MHX |
DNase-seq ENCSR916MHX [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (78 years)"]
|
 |
[0.0649, 14.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14185275 | 0.44% | 74000 |
| chr1 | 1383240 | 0.56% | 7137 |
| chr2 | 1027226 | 0.42% | 5461 |
| chr3 | 819743 | 0.41% | 4272 |
| chr4 | 589603 | 0.31% | 3064 |
| chr5 | 697732 | 0.38% | 3697 |
| chr6 | 748323 | 0.44% | 3871 |
| chr7 | 703991 | 0.44% | 3731 |
| chr8 | 610960 | 0.42% | 3212 |
| chr9 | 610355 | 0.44% | 3175 |
| chr10 | 671170 | 0.50% | 3539 |
| chr11 | 785214 | 0.58% | 4097 |
| chr12 | 707618 | 0.53% | 3655 |
| chr13 | 312508 | 0.27% | 1655 |
| chr14 | 463012 | 0.43% | 2394 |
| chr15 | 468060 | 0.46% | 2428 |
| chr16 | 562853 | 0.62% | 2939 |
| chr17 | 735371 | 0.88% | 3752 |
| chr18 | 270357 | 0.34% | 1461 |
| chr19 | 744790 | 1.27% | 3702 |
| chr20 | 413609 | 0.64% | 2200 |
| chr21 | 151805 | 0.32% | 816 |
| chr22 | 316525 | 0.62% | 1668 |
| chrX | 376330 | 0.24% | 1996 |
| chrY | 14880 | 0.03% | 78 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 74000 | 1 | 971 | 191.69 | 182 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF037ADM.bed.gz | 815.78 KB | bc7d5317b1c229cfaa5b103bec2a529b |
| ENCFF037ADM.tabix.bed.gz | 740.22 KB | 7c3b89eeb6ab9eedc45357a17cd1581d |
| ENCFF037ADM.tabix.bed.gz.tbi | 344.07 KB | baac24f244b58506f597ed3e096c0ad9 |
| genomic_resource.yaml | 2.07 KB | 6831ba7ef77c607fdd122470c087bf59 |
| statistics/ |